David Clayton
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/snpStats |
| Branch: RELEASE_3_9 |
| Last Commit: e31cdfb |
| Last Changed Date: 2019-05-02 11:53:09 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:46:51 -0400 (Wed, 16 Oct 2019).
| Package 1553/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| snpStats 1.34.0 David Clayton
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped |
| Package: snpStats |
| Version: 1.34.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data snpStats |
| StartedAt: 2019-10-15 19:57:02 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:58:27 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 85.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data snpStats ### ############################################################################## ############################################################################## * checking for file ‘snpStats/DESCRIPTION’ ... OK * preparing ‘snpStats’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘Fst-vignette.Rnw’ using Sweave Loading required package: snpStats Loading required package: survival Loading required package: Matrix --- finished re-building ‘Fst-vignette.Rnw’ --- re-building ‘data-input-vignette.Rnw’ using Sweave --- finished re-building ‘data-input-vignette.Rnw’ --- re-building ‘differences.Rnw’ using Sweave --- finished re-building ‘differences.Rnw’ --- re-building ‘imputation-vignette.Rnw’ using Sweave Error: processing vignette 'imputation-vignette.Rnw' failed with diagnostics: chunk 22 (label = mach) Error in read.mach(path) : Number of fields is not a multiple of number of lines --- failed re-building ‘imputation-vignette.Rnw’ --- re-building ‘ld-vignette.Rnw’ using Sweave --- finished re-building ‘ld-vignette.Rnw’ --- re-building ‘pca-vignette.Rnw’ using Sweave --- finished re-building ‘pca-vignette.Rnw’ --- re-building ‘snpStats-vignette.Rnw’ using Sweave --- finished re-building ‘snpStats-vignette.Rnw’ --- re-building ‘tdt-vignette.Rnw’ using Sweave Warning in tdt.snp(data = pedData, snp.data = genotypes) : 211 misinheritances were detected --- finished re-building ‘tdt-vignette.Rnw’ SUMMARY: processing the following file failed: ‘imputation-vignette.Rnw’ Error: Vignette re-building failed. Execution halted