| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:37:15 -0400 (Tue, 09 Apr 2019).
| Package 1449/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| scruff 1.1.6 Zhe Wang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ...NOT SUPPORTED... | ||||||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |||||||
| Package: scruff |
| Version: 1.1.6 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scruff |
| StartedAt: 2019-04-08 22:34:44 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 22:39:25 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 281.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scruff
###
##############################################################################
##############################################################################
* checking for file ‘scruff/DESCRIPTION’ ... OK
* preparing ‘scruff’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
2019-04-08 22:36:00 Start running scruff ...
2019-04-08 22:36:00 Start demultiplexing ...
Input sample information for FASTQ files:
Cell barcode input vector:
2019-04-08 22:36:09 ... Write demultiplex summary for all experiments to ./Demultiplex/20190408_223609_demultiplex.tab
... Initialize SingleCellExperiment object.
... Add demultiplex summary to SCE colData.
2019-04-08 22:36:10 ... Demultiplex done!
2019-04-08 22:36:10 Start alignment ...
... Input fastq paths:
2019-04-08 22:36:10 ... Creating output directory ./Alignment
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0001.fastq.gz ||
|| Output file : example_b1_cell_0001.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:10, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 60 ||
|| Mapped : 3 (5.0%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 57 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0002.fastq.gz ||
|| Output file : example_b1_cell_0002.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:12, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 18 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 18 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0003.fastq.gz ||
|| Output file : example_b1_cell_0003.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:14, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 19 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 19 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0004.fastq.gz ||
|| Output file : example_b1_cell_0004.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:16, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 27 ||
|| Mapped : 1 (3.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 26 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0005.fastq.gz ||
|| Output file : example_b1_cell_0005.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:18, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 26 ||
|| Mapped : 1 (3.8%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 25 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0006.fastq.gz ||
|| Output file : example_b1_cell_0006.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:20, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 53 ||
|| Mapped : 7 (13.2%) ||
|| Uniquely mapped : 7 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 46 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0007.fastq.gz ||
|| Output file : example_b1_cell_0007.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:22, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 25 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 25 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0008.fastq.gz ||
|| Output file : example_b1_cell_0008.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:24, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 85 ||
|| Mapped : 7 (8.2%) ||
|| Uniquely mapped : 7 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 78 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0009.fastq.gz ||
|| Output file : example_b1_cell_0009.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:27, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 18 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 18 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0010.fastq.gz ||
|| Output file : example_b1_cell_0010.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:29, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 13 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 13 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0011.fastq.gz ||
|| Output file : example_b1_cell_0011.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:31, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 17 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 17 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0012.fastq.gz ||
|| Output file : example_b1_cell_0012.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:33, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 25 ||
|| Mapped : 3 (12.0%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 22 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0013.fastq.gz ||
|| Output file : example_b1_cell_0013.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:35, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 23 ||
|| Mapped : 1 (4.3%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 22 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0014.fastq.gz ||
|| Output file : example_b1_cell_0014.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:37, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 12 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 12 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0015.fastq.gz ||
|| Output file : example_b1_cell_0015.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:39, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 22 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 22 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0016.fastq.gz ||
|| Output file : example_b1_cell_0016.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:41, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 13 ||
|| Mapped : 2 (15.4%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 11 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0017.fastq.gz ||
|| Output file : example_b1_cell_0017.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:43, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 23 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 23 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0018.fastq.gz ||
|| Output file : example_b1_cell_0018.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:45, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 24 ||
|| Mapped : 5 (20.8%) ||
|| Uniquely mapped : 5 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 19 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0019.fastq.gz ||
|| Output file : example_b1_cell_0019.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:47, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 263 ||
|| Mapped : 18 (6.8%) ||
|| Uniquely mapped : 18 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 245 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0020.fastq.gz ||
|| Output file : example_b1_cell_0020.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:49, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 42 ||
|| Mapped : 6 (14.3%) ||
|| Uniquely mapped : 6 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 36 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0021.fastq.gz ||
|| Output file : example_b1_cell_0021.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:51, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 5 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 5 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0022.fastq.gz ||
|| Output file : example_b1_cell_0022.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:54, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 24 ||
|| Mapped : 3 (12.5%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 21 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0023.fastq.gz ||
|| Output file : example_b1_cell_0023.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:56, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 19 ||
|| Mapped : 2 (10.5%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 17 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0024.fastq.gz ||
|| Output file : example_b1_cell_0024.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:58, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 26 ||
|| Mapped : 1 (3.8%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 25 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0025.fastq.gz ||
|| Output file : example_b1_cell_0025.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:00, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 23 ||
|| Mapped : 1 (4.3%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 22 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0026.fastq.gz ||
|| Output file : example_b1_cell_0026.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:02, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 32 ||
|| Mapped : 1 (3.1%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 31 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0027.fastq.gz ||
|| Output file : example_b1_cell_0027.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:04, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 26 ||
|| Mapped : 2 (7.7%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 24 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0028.fastq.gz ||
|| Output file : example_b1_cell_0028.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:06, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 26 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 26 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0029.fastq.gz ||
|| Output file : example_b1_cell_0029.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:09, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 30 ||
|| Mapped : 2 (6.7%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 28 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0030.fastq.gz ||
|| Output file : example_b1_cell_0030.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:11, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 36 ||
|| Mapped : 1 (2.8%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 35 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0031.fastq.gz ||
|| Output file : example_b1_cell_0031.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:13, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 457 ||
|| Mapped : 49 (10.7%) ||
|| Uniquely mapped : 49 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 408 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0032.fastq.gz ||
|| Output file : example_b1_cell_0032.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:15, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 27 ||
|| Mapped : 1 (3.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 26 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0033.fastq.gz ||
|| Output file : example_b1_cell_0033.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:17, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 20 ||
|| Mapped : 1 (5.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 19 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0034.fastq.gz ||
|| Output file : example_b1_cell_0034.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:20, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 14 ||
|| Mapped : 1 (7.1%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 13 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0035.fastq.gz ||
|| Output file : example_b1_cell_0035.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:22, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 11 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 11 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0036.fastq.gz ||
|| Output file : example_b1_cell_0036.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:24, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 23 ||
|| Mapped : 2 (8.7%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 21 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0037.fastq.gz ||
|| Output file : example_b1_cell_0037.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:26, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 56 ||
|| Mapped : 1 (1.8%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 55 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0038.fastq.gz ||
|| Output file : example_b1_cell_0038.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:28, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 48 ||
|| Mapped : 1 (2.1%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 47 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0039.fastq.gz ||
|| Output file : example_b1_cell_0039.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:30, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 17 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 17 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0040.fastq.gz ||
|| Output file : example_b1_cell_0040.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:32, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 44 ||
|| Mapped : 1 (2.3%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 43 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0041.fastq.gz ||
|| Output file : example_b1_cell_0041.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:34, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 49 ||
|| Mapped : 3 (6.1%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 46 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0042.fastq.gz ||
|| Output file : example_b1_cell_0042.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:36, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 319 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 319 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0043.fastq.gz ||
|| Output file : example_b1_cell_0043.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:38, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 30 ||
|| Mapped : 1 (3.3%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 29 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0044.fastq.gz ||
|| Output file : example_b1_cell_0044.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:40, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 67 ||
|| Mapped : 3 (4.5%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 64 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0045.fastq.gz ||
|| Output file : example_b1_cell_0045.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:42, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 245 ||
|| Mapped : 1 (0.4%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 244 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0046.fastq.gz ||
|| Output file : example_b1_cell_0046.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:44, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 101 ||
|| Mapped : 1 (1.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 100 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0047.fastq.gz ||
|| Output file : example_b1_cell_0047.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:46, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 49 ||
|| Mapped : 1 (2.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 48 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0048.fastq.gz ||
|| Output file : example_b1_cell_0048.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:48, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 165 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 165 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0049.fastq.gz ||
|| Output file : example_b1_cell_0049.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:50, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 66 ||
|| Mapped : 3 (4.5%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 63 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0050.fastq.gz ||
|| Output file : example_b1_cell_0050.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:52, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 19 ||
|| Mapped : 2 (10.5%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 17 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0051.fastq.gz ||
|| Output file : example_b1_cell_0051.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:54, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 45 ||
|| Mapped : 2 (4.4%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 43 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0052.fastq.gz ||
|| Output file : example_b1_cell_0052.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:56, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 79 ||
|| Mapped : 3 (3.8%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 76 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0053.fastq.gz ||
|| Output file : example_b1_cell_0053.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:58, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 51 ||
|| Mapped : 1 (2.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 50 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0054.fastq.gz ||
|| Output file : example_b1_cell_0054.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:00, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 47 ||
|| Mapped : 1 (2.1%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 46 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0055.fastq.gz ||
|| Output file : example_b1_cell_0055.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:02, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 44 ||
|| Mapped : 4 (9.1%) ||
|| Uniquely mapped : 4 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 40 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0056.fastq.gz ||
|| Output file : example_b1_cell_0056.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:04, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 37 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 37 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0057.fastq.gz ||
|| Output file : example_b1_cell_0057.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:07, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 243 ||
|| Mapped : 10 (4.1%) ||
|| Uniquely mapped : 10 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 233 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0058.fastq.gz ||
|| Output file : example_b1_cell_0058.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:08, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 27 ||
|| Mapped : 1 (3.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 26 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0059.fastq.gz ||
|| Output file : example_b1_cell_0059.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:10, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 36 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 36 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0060.fastq.gz ||
|| Output file : example_b1_cell_0060.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:12, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 46 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 46 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0061.fastq.gz ||
|| Output file : example_b1_cell_0061.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:14, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 50 ||
|| Mapped : 1 (2.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 49 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0062.fastq.gz ||
|| Output file : example_b1_cell_0062.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:16, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 93 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 93 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0063.fastq.gz ||
|| Output file : example_b1_cell_0063.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:18, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 47 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 47 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0064.fastq.gz ||
|| Output file : example_b1_cell_0064.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:20, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 46 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 46 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0065.fastq.gz ||
|| Output file : example_b1_cell_0065.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:22, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 7 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 7 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0066.fastq.gz ||
|| Output file : example_b1_cell_0066.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:24, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 2 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 2 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0067.fastq.gz ||
|| Output file : example_b1_cell_0067.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:26, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 4 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 4 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0068.fastq.gz ||
|| Output file : example_b1_cell_0068.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:29, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 27 ||
|| Mapped : 3 (11.1%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 24 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0069.fastq.gz ||
|| Output file : example_b1_cell_0069.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:31, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 8 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 8 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0070.fastq.gz ||
|| Output file : example_b1_cell_0070.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:33, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 4 ||
|| Mapped : 1 (25.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 3 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0071.fastq.gz ||
|| Output file : example_b1_cell_0071.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:35, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 1 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 1 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0073.fastq.gz ||
|| Output file : example_b1_cell_0073.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:37, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 25 ||
|| Mapped : 1 (4.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 24 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0074.fastq.gz ||
|| Output file : example_b1_cell_0074.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:39, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 30 ||
|| Mapped : 1 (3.3%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 29 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0075.fastq.gz ||
|| Output file : example_b1_cell_0075.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:41, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 4 ||
|| Mapped : 1 (25.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 3 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0076.fastq.gz ||
|| Output file : example_b1_cell_0076.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:43, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 38 ||
|| Mapped : 1 (2.6%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 37 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0077.fastq.gz ||
|| Output file : example_b1_cell_0077.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:45, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 11 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 11 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0078.fastq.gz ||
|| Output file : example_b1_cell_0078.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:47, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 6 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 6 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0079.fastq.gz ||
|| Output file : example_b1_cell_0079.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:49, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 3 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 3 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0080.fastq.gz ||
|| Output file : example_b1_cell_0080.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:51, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 18 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 18 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0081.fastq.gz ||
|| Output file : example_b1_cell_0081.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:53, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 2 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 2 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0082.fastq.gz ||
|| Output file : example_b1_cell_0082.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:55, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 28 ||
|| Mapped : 2 (7.1%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 26 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0083.fastq.gz ||
|| Output file : example_b1_cell_0083.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:57, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 27 ||
|| Mapped : 1 (3.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 26 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0084.fastq.gz ||
|| Output file : example_b1_cell_0084.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:59, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 30 ||
|| Mapped : 1 (3.3%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 29 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0085.fastq.gz ||
|| Output file : example_b1_cell_0085.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:01, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 57 ||
|| Mapped : 1 (1.8%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 56 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0086.fastq.gz ||
|| Output file : example_b1_cell_0086.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:03, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 36 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 36 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0087.fastq.gz ||
|| Output file : example_b1_cell_0087.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:05, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 37 ||
|| Mapped : 2 (5.4%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 35 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0088.fastq.gz ||
|| Output file : example_b1_cell_0088.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:06, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 32 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 32 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0089.fastq.gz ||
|| Output file : example_b1_cell_0089.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:08, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 24 ||
|| Mapped : 1 (4.2%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 23 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0090.fastq.gz ||
|| Output file : example_b1_cell_0090.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:10, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 59 ||
|| Mapped : 3 (5.1%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 56 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0091.fastq.gz ||
|| Output file : example_b1_cell_0091.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:12, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 144 ||
|| Mapped : 1 (0.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 143 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0092.fastq.gz ||
|| Output file : example_b1_cell_0092.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:14, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 55 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 55 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0093.fastq.gz ||
|| Output file : example_b1_cell_0093.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:16, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 48 ||
|| Mapped : 1 (2.1%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 47 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0094.fastq.gz ||
|| Output file : example_b1_cell_0094.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:18, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [8,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 71 ||
|| Mapped : 1 (1.4%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 70 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_b1_cell_0095.fastq.gz ||
|| Output file : example_b1_cell_0095.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:20, pid=3768) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,37] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 3,979 ||
|| Mapped : 453 (11.4%) ||
|| Uniquely mapped : 453 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 3,526 ||
|| ||
|| Indels : 4 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0001.fastq.gz ||
|| Output file : example_1h1_cell_0001.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:10, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 84 ||
|| Mapped : 4 (4.8%) ||
|| Uniquely mapped : 4 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 80 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0002.fastq.gz ||
|| Output file : example_1h1_cell_0002.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:12, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 60 ||
|| Mapped : 2 (3.3%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 58 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0003.fastq.gz ||
|| Output file : example_1h1_cell_0003.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:14, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 14 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 14 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0004.fastq.gz ||
|| Output file : example_1h1_cell_0004.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:16, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 111 ||
|| Mapped : 3 (2.7%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 108 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0005.fastq.gz ||
|| Output file : example_1h1_cell_0005.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:18, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 101 ||
|| Mapped : 1 (1.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 100 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0006.fastq.gz ||
|| Output file : example_1h1_cell_0006.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:20, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 64 ||
|| Mapped : 3 (4.7%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 61 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0007.fastq.gz ||
|| Output file : example_1h1_cell_0007.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:22, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 41 ||
|| Mapped : 3 (7.3%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 38 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0008.fastq.gz ||
|| Output file : example_1h1_cell_0008.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:24, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 85 ||
|| Mapped : 2 (2.4%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 83 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0009.fastq.gz ||
|| Output file : example_1h1_cell_0009.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:27, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 127 ||
|| Mapped : 5 (3.9%) ||
|| Uniquely mapped : 5 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 122 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0010.fastq.gz ||
|| Output file : example_1h1_cell_0010.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:29, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 108 ||
|| Mapped : 1 (0.9%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 107 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0011.fastq.gz ||
|| Output file : example_1h1_cell_0011.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:31, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 87 ||
|| Mapped : 2 (2.3%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 85 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0012.fastq.gz ||
|| Output file : example_1h1_cell_0012.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:33, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 72 ||
|| Mapped : 1 (1.4%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 71 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0013.fastq.gz ||
|| Output file : example_1h1_cell_0013.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:35, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 30 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 30 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0014.fastq.gz ||
|| Output file : example_1h1_cell_0014.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:37, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 35 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 35 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0015.fastq.gz ||
|| Output file : example_1h1_cell_0015.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:39, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 38 ||
|| Mapped : 2 (5.3%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 36 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0016.fastq.gz ||
|| Output file : example_1h1_cell_0016.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:41, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 138 ||
|| Mapped : 1 (0.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 137 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0017.fastq.gz ||
|| Output file : example_1h1_cell_0017.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:43, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 104 ||
|| Mapped : 1 (1.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 103 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0018.fastq.gz ||
|| Output file : example_1h1_cell_0018.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:45, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 80 ||
|| Mapped : 2 (2.5%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 78 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0019.fastq.gz ||
|| Output file : example_1h1_cell_0019.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:47, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 126 ||
|| Mapped : 1 (0.8%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 125 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0020.fastq.gz ||
|| Output file : example_1h1_cell_0020.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:49, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 74 ||
|| Mapped : 1 (1.4%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 73 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0021.fastq.gz ||
|| Output file : example_1h1_cell_0021.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:51, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 64 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 64 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0022.fastq.gz ||
|| Output file : example_1h1_cell_0022.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:53, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 69 ||
|| Mapped : 1 (1.4%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 68 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0023.fastq.gz ||
|| Output file : example_1h1_cell_0023.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:56, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 116 ||
|| Mapped : 3 (2.6%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 113 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0024.fastq.gz ||
|| Output file : example_1h1_cell_0024.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:36:58, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 58 ||
|| Mapped : 2 (3.4%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 56 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0025.fastq.gz ||
|| Output file : example_1h1_cell_0025.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:00, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 15 ||
|| Mapped : 1 (6.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 14 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0026.fastq.gz ||
|| Output file : example_1h1_cell_0026.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:02, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 57 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 57 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0027.fastq.gz ||
|| Output file : example_1h1_cell_0027.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:04, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 30 ||
|| Mapped : 2 (6.7%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 28 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0028.fastq.gz ||
|| Output file : example_1h1_cell_0028.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:06, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 50 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 50 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0029.fastq.gz ||
|| Output file : example_1h1_cell_0029.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:08, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 123 ||
|| Mapped : 3 (2.4%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 120 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0030.fastq.gz ||
|| Output file : example_1h1_cell_0030.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:11, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 99 ||
|| Mapped : 4 (4.0%) ||
|| Uniquely mapped : 4 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 95 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0031.fastq.gz ||
|| Output file : example_1h1_cell_0031.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:13, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 78 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 78 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0032.fastq.gz ||
|| Output file : example_1h1_cell_0032.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:15, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 36 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 36 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0033.fastq.gz ||
|| Output file : example_1h1_cell_0033.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:17, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 77 ||
|| Mapped : 6 (7.8%) ||
|| Uniquely mapped : 6 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 71 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0034.fastq.gz ||
|| Output file : example_1h1_cell_0034.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:19, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 120 ||
|| Mapped : 4 (3.3%) ||
|| Uniquely mapped : 4 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 116 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0035.fastq.gz ||
|| Output file : example_1h1_cell_0035.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:22, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 100 ||
|| Mapped : 2 (2.0%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 98 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0036.fastq.gz ||
|| Output file : example_1h1_cell_0036.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:24, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 37 ||
|| Mapped : 4 (10.8%) ||
|| Uniquely mapped : 4 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 33 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0037.fastq.gz ||
|| Output file : example_1h1_cell_0037.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:26, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 49 ||
|| Mapped : 2 (4.1%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 47 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0038.fastq.gz ||
|| Output file : example_1h1_cell_0038.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:28, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 99 ||
|| Mapped : 2 (2.0%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 97 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0039.fastq.gz ||
|| Output file : example_1h1_cell_0039.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:30, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 91 ||
|| Mapped : 1 (1.1%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 90 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0040.fastq.gz ||
|| Output file : example_1h1_cell_0040.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:32, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 69 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 69 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0041.fastq.gz ||
|| Output file : example_1h1_cell_0041.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:34, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 121 ||
|| Mapped : 2 (1.7%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 119 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0042.fastq.gz ||
|| Output file : example_1h1_cell_0042.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:36, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 70 ||
|| Mapped : 1 (1.4%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 69 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0043.fastq.gz ||
|| Output file : example_1h1_cell_0043.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:38, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 174 ||
|| Mapped : 7 (4.0%) ||
|| Uniquely mapped : 7 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 167 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0044.fastq.gz ||
|| Output file : example_1h1_cell_0044.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:39, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 285 ||
|| Mapped : 5 (1.8%) ||
|| Uniquely mapped : 5 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 280 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0046.fastq.gz ||
|| Output file : example_1h1_cell_0046.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:41, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 144 ||
|| Mapped : 4 (2.8%) ||
|| Uniquely mapped : 4 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 140 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0047.fastq.gz ||
|| Output file : example_1h1_cell_0047.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:43, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 93 ||
|| Mapped : 1 (1.1%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 92 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0048.fastq.gz ||
|| Output file : example_1h1_cell_0048.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:45, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 191 ||
|| Mapped : 4 (2.1%) ||
|| Uniquely mapped : 4 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 187 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0049.fastq.gz ||
|| Output file : example_1h1_cell_0049.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:48, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 114 ||
|| Mapped : 4 (3.5%) ||
|| Uniquely mapped : 4 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 110 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0050.fastq.gz ||
|| Output file : example_1h1_cell_0050.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:50, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 116 ||
|| Mapped : 5 (4.3%) ||
|| Uniquely mapped : 5 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 111 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0051.fastq.gz ||
|| Output file : example_1h1_cell_0051.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:52, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 94 ||
|| Mapped : 2 (2.1%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 92 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0052.fastq.gz ||
|| Output file : example_1h1_cell_0052.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:54, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 163 ||
|| Mapped : 2 (1.2%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 161 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0053.fastq.gz ||
|| Output file : example_1h1_cell_0053.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:55, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 100 ||
|| Mapped : 1 (1.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 99 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0054.fastq.gz ||
|| Output file : example_1h1_cell_0054.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:37:58, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 115 ||
|| Mapped : 2 (1.7%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 113 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0055.fastq.gz ||
|| Output file : example_1h1_cell_0055.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:00, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 130 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 130 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0056.fastq.gz ||
|| Output file : example_1h1_cell_0056.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:02, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 161 ||
|| Mapped : 6 (3.7%) ||
|| Uniquely mapped : 6 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 155 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0057.fastq.gz ||
|| Output file : example_1h1_cell_0057.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:04, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 166 ||
|| Mapped : 6 (3.6%) ||
|| Uniquely mapped : 6 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 160 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0058.fastq.gz ||
|| Output file : example_1h1_cell_0058.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:06, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 34 ||
|| Mapped : 1 (2.9%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 33 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0059.fastq.gz ||
|| Output file : example_1h1_cell_0059.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:08, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 113 ||
|| Mapped : 3 (2.7%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 110 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0060.fastq.gz ||
|| Output file : example_1h1_cell_0060.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:10, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 116 ||
|| Mapped : 1 (0.9%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 115 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0061.fastq.gz ||
|| Output file : example_1h1_cell_0061.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:12, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 87 ||
|| Mapped : 2 (2.3%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 85 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0062.fastq.gz ||
|| Output file : example_1h1_cell_0062.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:14, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 40 ||
|| Mapped : 1 (2.5%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 39 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0063.fastq.gz ||
|| Output file : example_1h1_cell_0063.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:16, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 35 ||
|| Mapped : 3 (8.6%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 32 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0064.fastq.gz ||
|| Output file : example_1h1_cell_0064.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:18, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 143 ||
|| Mapped : 1 (0.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 142 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0065.fastq.gz ||
|| Output file : example_1h1_cell_0065.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:20, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 147 ||
|| Mapped : 3 (2.0%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 144 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0066.fastq.gz ||
|| Output file : example_1h1_cell_0066.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:22, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 93 ||
|| Mapped : 2 (2.2%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 91 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0067.fastq.gz ||
|| Output file : example_1h1_cell_0067.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:24, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 100 ||
|| Mapped : 1 (1.0%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 99 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0068.fastq.gz ||
|| Output file : example_1h1_cell_0068.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:26, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 86 ||
|| Mapped : 2 (2.3%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 84 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0069.fastq.gz ||
|| Output file : example_1h1_cell_0069.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:28, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 45 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 45 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0070.fastq.gz ||
|| Output file : example_1h1_cell_0070.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:30, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 94 ||
|| Mapped : 1 (1.1%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 93 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0071.fastq.gz ||
|| Output file : example_1h1_cell_0071.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:32, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 204 ||
|| Mapped : 6 (2.9%) ||
|| Uniquely mapped : 6 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 198 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0072.fastq.gz ||
|| Output file : example_1h1_cell_0072.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:34, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 183 ||
|| Mapped : 7 (3.8%) ||
|| Uniquely mapped : 7 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 176 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0073.fastq.gz ||
|| Output file : example_1h1_cell_0073.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:36, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 90 ||
|| Mapped : 1 (1.1%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 89 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0074.fastq.gz ||
|| Output file : example_1h1_cell_0074.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:38, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 78 ||
|| Mapped : 1 (1.3%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 77 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0075.fastq.gz ||
|| Output file : example_1h1_cell_0075.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:40, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 60 ||
|| Mapped : 1 (1.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 59 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0076.fastq.gz ||
|| Output file : example_1h1_cell_0076.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:42, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 131 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 131 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0077.fastq.gz ||
|| Output file : example_1h1_cell_0077.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:44, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 163 ||
|| Mapped : 3 (1.8%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 160 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0078.fastq.gz ||
|| Output file : example_1h1_cell_0078.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:46, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 203 ||
|| Mapped : 8 (3.9%) ||
|| Uniquely mapped : 8 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 195 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0079.fastq.gz ||
|| Output file : example_1h1_cell_0079.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:48, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 62 ||
|| Mapped : 3 (4.8%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 59 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0080.fastq.gz ||
|| Output file : example_1h1_cell_0080.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:50, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 216 ||
|| Mapped : 5 (2.3%) ||
|| Uniquely mapped : 5 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 211 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0081.fastq.gz ||
|| Output file : example_1h1_cell_0081.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:52, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 101 ||
|| Mapped : 2 (2.0%) ||
|| Uniquely mapped : 2 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 99 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0082.fastq.gz ||
|| Output file : example_1h1_cell_0082.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:54, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 170 ||
|| Mapped : 6 (3.5%) ||
|| Uniquely mapped : 6 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 164 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0083.fastq.gz ||
|| Output file : example_1h1_cell_0083.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:56, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 99 ||
|| Mapped : 7 (7.1%) ||
|| Uniquely mapped : 7 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 92 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0084.fastq.gz ||
|| Output file : example_1h1_cell_0084.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:38:58, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 135 ||
|| Mapped : 1 (0.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 134 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0085.fastq.gz ||
|| Output file : example_1h1_cell_0085.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:00, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 23 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 23 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0086.fastq.gz ||
|| Output file : example_1h1_cell_0086.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:02, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 230 ||
|| Mapped : 6 (2.6%) ||
|| Uniquely mapped : 6 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 224 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0087.fastq.gz ||
|| Output file : example_1h1_cell_0087.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:04, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 96 ||
|| Mapped : 7 (7.3%) ||
|| Uniquely mapped : 7 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 89 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0088.fastq.gz ||
|| Output file : example_1h1_cell_0088.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:06, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 249 ||
|| Mapped : 3 (1.2%) ||
|| Uniquely mapped : 3 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 246 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0089.fastq.gz ||
|| Output file : example_1h1_cell_0089.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:08, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 144 ||
|| Mapped : 5 (3.5%) ||
|| Uniquely mapped : 5 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 139 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0090.fastq.gz ||
|| Output file : example_1h1_cell_0090.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:10, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 52 ||
|| Mapped : 4 (7.7%) ||
|| Uniquely mapped : 4 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 48 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0091.fastq.gz ||
|| Output file : example_1h1_cell_0091.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:12, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 127 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 127 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0092.fastq.gz ||
|| Output file : example_1h1_cell_0092.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:14, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 155 ||
|| Mapped : 1 (0.6%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 154 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0093.fastq.gz ||
|| Output file : example_1h1_cell_0093.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:16, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 225 ||
|| Mapped : 10 (4.4%) ||
|| Uniquely mapped : 10 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 215 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0094.fastq.gz ||
|| Output file : example_1h1_cell_0094.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:18, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [2,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 136 ||
|| Mapped : 1 (0.7%) ||
|| Uniquely mapped : 1 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 135 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0095.fastq.gz ||
|| Output file : example_1h1_cell_0095.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:20, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 9 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 9 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
Rsubread 1.33.33
//================================= setting ==================================\\
|| ||
|| Function : Read alignment (RNA-Seq) ||
|| Input file : example_1h1_cell_0096.fastq.gz ||
|| Output file : example_1h1_cell_0096.BAM (BAM) ||
|| Index name : GRCm38_MT ||
|| ||
|| ------------------------------------ ||
|| ||
|| Threads : 1 ||
|| Phred offset : 33 ||
|| Min votes : 3 / 10 ||
|| Max mismatches : 3 ||
|| Max indel length : 5 ||
|| Report multi-mapping reads : yes ||
|| Max alignments per multi-mapping read : 1 ||
|| ||
\\============================================================================//
//================= Running (08-Apr-2019 22:39:22, pid=3767) =================\\
|| ||
|| The input file contains base space reads. ||
|| The range of Phred scores observed in the data is [14,36] ||
|| Load the 1-th index block... ||
|| ||
|| Completed successfully. ||
|| ||
\\==================================== ====================================//
//================================ Summary =================================\\
|| ||
|| Total reads : 13 ||
|| Mapped : 0 (0.0%) ||
|| Uniquely mapped : 0 ||
|| Multi-mapping : 0 ||
|| ||
|| Unmapped : 13 ||
|| ||
|| Indels : 0 ||
|| ||
|| Running time : 0.0 minutes ||
|| ||
\\============================================================================//
Quitting from lines 70-98 (scruff.Rmd)
Error: processing vignette 'scruff.Rmd' failed with diagnostics:
BiocParallel errors
element index: 1, 2, 3, 4, 5, 6, ...
first error: a character vector argument expected
Execution halted