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BUILD BIN report for scmap on tokay2

This page was generated on 2019-10-16 12:38:49 -0400 (Wed, 16 Oct 2019).

Package 1469/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scmap 1.6.0
Vladimir Kiselev
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/scmap
Branch: RELEASE_3_9
Last Commit: 689013b
Last Changed Date: 2019-05-02 11:54:07 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: scmap
Version: 1.6.0
Command: rm -rf scmap.buildbin-libdir && mkdir scmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scmap.buildbin-libdir scmap_1.6.0.tar.gz
StartedAt: 2019-10-16 10:10:25 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 10:11:31 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 66.6 seconds
RetCode: 0
Status:  OK  
PackageFile: scmap_1.6.0.zip
PackageFileSize: 3.598 MiB

Command output

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###
### Running command:
###
###   rm -rf scmap.buildbin-libdir && mkdir scmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scmap.buildbin-libdir scmap_1.6.0.tar.gz
###
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install for i386

* installing *source* package 'scmap' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c scmap.cpp -o scmap.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o scmap.dll tmp.def RcppExports.o scmap.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/scmap.buildbin-libdir/00LOCK-scmap/00new/scmap/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** help
*** installing help indices
  converting help for package 'scmap'
    finding HTML links ... done
    EuclSqNorm                              html  
    NN                                      html  
    ann                                     html  
    getSankey                               html  
    indexCell                               html  
    indexCluster                            html  
    normalise                               html  
    scmapCell                               html  
    scmapCell2Cluster                       html  
    scmapCluster                            html  
    selectFeatures                          html  
    setFeatures                             html  
    subdistsmult                            html  
    yan                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** testing if installed package can be loaded from final location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scmap' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c scmap.cpp -o scmap.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o scmap.dll tmp.def RcppExports.o scmap.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/scmap.buildbin-libdir/scmap/libs/x64
** testing if installed package can be loaded
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
* MD5 sums
packaged installation of 'scmap' as scmap_1.6.0.zip
* DONE (scmap)