Kevin Wang
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/scMerge |
| Branch: RELEASE_3_9 |
| Last Commit: 74ec5e4 |
| Last Changed Date: 2019-05-02 11:54:15 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:44:12 -0400 (Wed, 16 Oct 2019).
| Package 1470/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| scMerge 1.0.0 Kevin Wang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: scMerge |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/scMerge_1.0.0.tar.gz && rm -rf scMerge.buildbin-libdir && mkdir scMerge.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scMerge.buildbin-libdir scMerge_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL scMerge_1.0.0.zip && rm scMerge_1.0.0.tar.gz scMerge_1.0.0.zip |
| StartedAt: 2019-10-15 20:15:24 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:17:39 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 134.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/scMerge_1.0.0.tar.gz && rm -rf scMerge.buildbin-libdir && mkdir scMerge.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scMerge.buildbin-libdir scMerge_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL scMerge_1.0.0.zip && rm scMerge_1.0.0.tar.gz scMerge_1.0.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 3353k 100 3353k 0 0 36.2M 0 --:--:-- --:--:-- --:--:-- 38.9M
install for i386
* installing *source* package 'scMerge' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c rcppFastMatrixOp.cpp -o rcppFastMatrixOp.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c test-runner.cpp -o test-runner.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include/testthat.h:1:0,
from test-runner.cpp:7:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include/testthat/testthat.h: In function 'std::ostream& Catch::cout()':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include/testthat/testthat.h:140:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
}
^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include/testthat/testthat.h: In function 'std::ostream& Catch::cerr()':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include/testthat/testthat.h:147:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
}
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o scMerge.dll tmp.def RcppExports.o rcppFastMatrixOp.o test-runner.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/scMerge.buildbin-libdir/00LOCK-scMerge/00new/scMerge/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'scMerge'
finding HTML links ... done
eigenMatMult html
eigenResidop html
example_sce html
fastRUVIII html
ruvSimulate html
scMerge html
scRUVIII html
scRUVg html
scReplicate html
scSEGIndex html
sce_cbind html
segList html
segList_ensemblGeneID html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'scMerge' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c rcppFastMatrixOp.cpp -o rcppFastMatrixOp.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c test-runner.cpp -o test-runner.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include/testthat.h:1:0,
from test-runner.cpp:7:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include/testthat/testthat.h: In function 'std::ostream& Catch::cout()':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include/testthat/testthat.h:140:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
}
^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include/testthat/testthat.h: In function 'std::ostream& Catch::cerr()':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/testthat/include/testthat/testthat.h:147:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
}
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o scMerge.dll tmp.def RcppExports.o rcppFastMatrixOp.o test-runner.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/scMerge.buildbin-libdir/scMerge/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scMerge' as scMerge_1.0.0.zip
* DONE (scMerge)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'scMerge' successfully unpacked and MD5 sums checked