Steve Pederson
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/ngsReports |
| Branch: RELEASE_3_9 |
| Last Commit: 6757f6e |
| Last Changed Date: 2019-08-31 12:11:51 -0400 (Sat, 31 Aug 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:43:57 -0400 (Wed, 16 Oct 2019).
| Package 1105/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ngsReports 1.0.1 Steve Pederson
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ngsReports |
| Version: 1.0.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ngsReports_1.0.1.tar.gz && rm -rf ngsReports.buildbin-libdir && mkdir ngsReports.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ngsReports.buildbin-libdir ngsReports_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ngsReports_1.0.1.zip && rm ngsReports_1.0.1.tar.gz ngsReports_1.0.1.zip |
| StartedAt: 2019-10-15 20:11:04 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:12:34 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 89.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ngsReports_1.0.1.tar.gz && rm -rf ngsReports.buildbin-libdir && mkdir ngsReports.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ngsReports.buildbin-libdir ngsReports_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ngsReports_1.0.1.zip && rm ngsReports_1.0.1.tar.gz ngsReports_1.0.1.zip
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install for i386
* installing *source* package 'ngsReports' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ngsReports'
finding HTML links ... done
FastqcData html
FastqcDataList html
PwfCols-class html
TheoreticalGC-class html
dot-FastqcFile-class html
dot-addPercent html
dot-emptyPlot html
dot-hidePWFRects html
dot-isValidBowtieLog html
dot-isValidDuplicationMetricsLog html
dot-isValidHisat2Log html
dot-isValidStarLog html
dot-makeDendro html
dot-makeLabels html
dot-makeSidebar html
dot-parseBowtieLogs html
dot-parseDuplicationMetricsLogs html
dot-parseHisat2Logs html
dot-parseStarLogs html
dot-renderDendro html
dot-scale_fill_pwf html
dot-splitByTab html
estGcDistn html
extract-methods html
fqName-methods html
fqcVersion html
gcAvail html
gcTheoretical html
getColours-methods html
getGC html
getModule html
getSummary html
importNgsLogs html
isCompressed html
mData html
maxAdapterContent html
overRep2Fasta-methods html
path html
plotAdapterContent-methods html
plotBaseQuals-methods html
plotDupLevels-methods html
plotGcContent-methods html
plotKmers-methods html
plotNContent-methods html
plotOverrep-methods html
plotReadTotals-methods html
plotSeqContent-methods html
plotSeqLengthDistn-methods html
plotSeqQuals-methods html
plotSummary-methods html
pwf html
readTotals html
runFastQC-methods html
writeHtmlReport html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ngsReports' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ngsReports' as ngsReports_1.0.1.zip
* DONE (ngsReports)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ngsReports' successfully unpacked and MD5 sums checked