Hyungwon Choi
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/metaArray |
| Branch: RELEASE_3_9 |
| Last Commit: df9ddad |
| Last Changed Date: 2019-05-02 11:53:05 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:20:21 -0400 (Wed, 16 Oct 2019).
| Package 955/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| metaArray 1.62.0 Hyungwon Choi
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: metaArray |
| Version: 1.62.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/metaArray_1.62.0.tar.gz && rm -rf metaArray.buildbin-libdir && mkdir metaArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaArray.buildbin-libdir metaArray_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL metaArray_1.62.0.zip && rm metaArray_1.62.0.tar.gz metaArray_1.62.0.zip |
| StartedAt: 2019-10-15 19:01:59 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:02:30 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 30.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/metaArray_1.62.0.tar.gz && rm -rf metaArray.buildbin-libdir && mkdir metaArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaArray.buildbin-libdir metaArray_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL metaArray_1.62.0.zip && rm metaArray_1.62.0.tar.gz metaArray_1.62.0.zip
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install for i386
* installing *source* package 'metaArray' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c contr.c -o contr.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c dproc.c -o dproc.o
dproc.c: In function 'malloc_CH':
dproc.c:111:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
int i, j, nr, nc, num;
^
dproc.c: In function 'free_CH':
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
int num, nr, nc;
^
dproc.c:192:12: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
int num, nr, nc;
^
dproc.c:192:7: warning: variable 'num' set but not used [-Wunused-but-set-variable]
int num, nr, nc;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c dproc2.c -o dproc2.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c intcor.c -o intcor.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c lowess.c -o lowess.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c mmath.c -o mmath.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c perm.c -o perm.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:131:53: warning: variable 'shift' set but not used [-Wunused-but-set-variable]
double kappa_b, kappa_a, kappa_new, aaa, res_max, shift;
^
poe.c:120:20: warning: variable 'accept' set but not used [-Wunused-but-set-variable]
int nr,nc,tt,gg, accept;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o metaArray.dll tmp.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/metaArray.buildbin-libdir/00LOCK-metaArray/00new/metaArray/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'metaArray'
finding HTML links ... done
Zscore html
em.draw html
find.init html
fit.em html
intcor html
logit html
mdata html
poe.em html
poe.mcmc html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'metaArray' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c contr.c -o contr.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c dproc.c -o dproc.o
dproc.c: In function 'malloc_CH':
dproc.c:111:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
int i, j, nr, nc, num;
^
dproc.c: In function 'free_CH':
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
int num, nr, nc;
^
dproc.c:192:12: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
int num, nr, nc;
^
dproc.c:192:7: warning: variable 'num' set but not used [-Wunused-but-set-variable]
int num, nr, nc;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c dproc2.c -o dproc2.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c intcor.c -o intcor.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c lowess.c -o lowess.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c mmath.c -o mmath.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c perm.c -o perm.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:131:53: warning: variable 'shift' set but not used [-Wunused-but-set-variable]
double kappa_b, kappa_a, kappa_new, aaa, res_max, shift;
^
poe.c:120:20: warning: variable 'accept' set but not used [-Wunused-but-set-variable]
int nr,nc,tt,gg, accept;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o metaArray.dll tmp.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/metaArray.buildbin-libdir/metaArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metaArray' as metaArray_1.62.0.zip
* DONE (metaArray)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'metaArray' successfully unpacked and MD5 sums checked