Multiple platform build/check report for BioC 3.9 - CHECK report for impute on celaya2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:impute.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings impute_1.58.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/impute.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘impute/DESCRIPTION’ ... OK
* this is package ‘impute’ version ‘1.58.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘impute’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/impute.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL impute
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘impute’ ...
** using staged installation
** libs
gfortran  -fPIC  -Wall -g -O2  -c knnimpute.f -o knnimpute.o
f951: Warning: Nonconforming tab character in column 1 of line 89 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 91 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 92 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 93 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 94 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 95 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 96 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 97 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 98 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 99 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 101 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 102 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 103 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 104 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 105 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 106 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 107 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 108 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 109 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 110 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 111 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 112 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 113 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 114 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 115 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 116 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 117 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 118 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 119 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 120 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 121 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 122 [-Wtabs]
knnimpute.f:168:0:

       ratio=dabs(dnew-dold)/dold
 
Warning: ‘dold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o impute.so knnimpute.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-impute/00new/impute/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (impute)

name	user	system	elapsed
impute.knn	0.521	0.062	0.584
khanmiss	0.180	0.009	0.188

CHECK report for impute on celaya2

Summary

Command output

Installation output

Tests output

Example timings