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INSTALL report for customProDB on tokay2

This page was generated on 2019-10-16 12:28:03 -0400 (Wed, 16 Oct 2019).

Package 376/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
customProDB 1.24.0
Xiaojing Wang
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/customProDB
Branch: RELEASE_3_9
Last Commit: 38a8519
Last Changed Date: 2019-05-02 11:53:43 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: customProDB
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/customProDB_1.24.0.tar.gz && rm -rf customProDB.buildbin-libdir && mkdir customProDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=customProDB.buildbin-libdir customProDB_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL customProDB_1.24.0.zip && rm customProDB_1.24.0.tar.gz customProDB_1.24.0.zip
StartedAt: 2019-10-15 20:34:56 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:36:47 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 111.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/customProDB_1.24.0.tar.gz && rm -rf customProDB.buildbin-libdir && mkdir customProDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=customProDB.buildbin-libdir customProDB_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL customProDB_1.24.0.zip && rm customProDB_1.24.0.tar.gz customProDB_1.24.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  433k  100  433k    0     0  8649k      0 --:--:-- --:--:-- --:--:-- 9845k

install for i386

* installing *source* package 'customProDB' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'customProDB'
    finding HTML links ... done
    Bed2Range                               html  
    InputVcf                                html  
    JunctionType                            html  
    Multiple_VCF                            html  
    OutputNovelJun                          html  
    OutputVarprocodingseq                   html  
    OutputVarproseq                         html  
    OutputVarproseq_single                  html  
    Outputaberrant                          html  
    Outputproseq                            html  
    OutputsharedPro                         html  
    Positionincoding                        html  
    PrepareAnnotationEnsembl                html  
    PrepareAnnotationRefseq                 html  
    SharedJunc                              html  
    Varlocation                             html  
    aaVariation                             html  
    calculateRPKM                           html  
    easyRun                                 html  
    easyRun_mul                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'customProDB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'customProDB' as customProDB_1.24.0.zip
* DONE (customProDB)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'customProDB' successfully unpacked and MD5 sums checked