Package: conumee

Version: 1.15.0

Command: chmod a+r conumee -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data conumee

StartedAt: 2018-10-22 05:57:04 -0400 (Mon, 22 Oct 2018)

EndedAt: 2018-10-22 06:00:43 -0400 (Mon, 22 Oct 2018)

EllapsedTime: 218.8 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   chmod a+r conumee -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data conumee
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* checking for file 'conumee/DESCRIPTION' ... OK
* preparing 'conumee':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
    rowSums, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: DelayedArray
Loading required package: matrixStats

Attaching package: 'matrixStats'

The following objects are masked from 'package:Biobase':

    anyMissing, rowMedians

Loading required package: BiocParallel

Attaching package: 'DelayedArray'

The following objects are masked from 'package:matrixStats':

    colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges

The following objects are masked from 'package:base':

    aperm, apply

Loading required package: Biostrings
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:DelayedArray':

    type

The following object is masked from 'package:base':

    strsplit

Loading required package: bumphunter
Loading required package: foreach
Loading required package: iterators
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Registered S3 method overwritten by 'openssl':
  method      from
  print.bytes Rcpp
Registered S3 method overwritten by 'dplyr':
  method               from  
  as.data.frame.tbl_df tibble
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: IlluminaHumanMethylation450kanno.ilmn12.hg19
Loading required package: IlluminaHumanMethylation450kmanifest
Loading required package: IlluminaHumanMethylationEPICanno.ilm10b2.hg19

Attaching package: 'IlluminaHumanMethylationEPICanno.ilm10b2.hg19'

The following objects are masked from 'package:IlluminaHumanMethylation450kanno.ilmn12.hg19':

    Islands.UCSC, Locations, Manifest, Other, SNPs.132CommonSingle,
    SNPs.135CommonSingle, SNPs.137CommonSingle,
    SNPs.138CommonSingle, SNPs.141CommonSingle,
    SNPs.142CommonSingle, SNPs.144CommonSingle,
    SNPs.146CommonSingle, SNPs.147CommonSingle, SNPs.Illumina

Loading required package: IlluminaHumanMethylationEPICmanifest
Quitting from lines 39-45 (conumee.Rmd) 
Error: processing vignette 'conumee.Rmd' failed with diagnostics:
url does not exist.
Execution halted