Package: chipseq

Version: 1.34.0

Command: rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipseq.buildbin-libdir chipseq_1.34.0.tar.gz

StartedAt: 2019-10-16 08:53:28 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 08:54:16 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 47.9 seconds

RetCode: 0

Status:  OK

PackageFile: chipseq_1.34.0.zip

PackageFileSize: 2.24 MiB

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### Running command:
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###   rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipseq.buildbin-libdir chipseq_1.34.0.tar.gz
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install for i386

* installing *source* package 'chipseq' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c rlesumprod.c -o rlesumprod.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o chipseq.dll tmp.def rlesumprod.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/chipseq.buildbin-libdir/00LOCK-chipseq/00new/chipseq/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'chipseq'
    finding HTML links ... done
    chipseqFilter                           html  
    coverageplot                            html  
    cstest                                  html  
    diffPeakSummary                         html  
    estimate.mean.fraglen                   html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp4m6Vx8/R.INSTALL12c077f14ce4/chipseq/man/estimate.mean.fraglen.Rd:48: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    islandDepthPlot                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp4m6Vx8/R.INSTALL12c077f14ce4/chipseq/man/islandDepthPlot.Rd:17: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic
    laneSubsample                           html  
    peakCutoff                              html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp4m6Vx8/R.INSTALL12c077f14ce4/chipseq/man/peakCutoff.Rd:17: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic
    peakSummary-methods                     html  
    subsetSummary                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'chipseq' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c rlesumprod.c -o rlesumprod.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o chipseq.dll tmp.def rlesumprod.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/chipseq.buildbin-libdir/chipseq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chipseq' as chipseq_1.34.0.zip
* DONE (chipseq)