Jan Oosting
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/beadarraySNP |
| Branch: RELEASE_3_9 |
| Last Commit: 137a6b8 |
| Last Changed Date: 2019-05-02 11:53:06 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:20:49 -0400 (Wed, 16 Oct 2019).
| Package 122/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| beadarraySNP 1.50.0 Jan Oosting
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: beadarraySNP |
| Version: 1.50.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/beadarraySNP_1.50.0.tar.gz && rm -rf beadarraySNP.buildbin-libdir && mkdir beadarraySNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=beadarraySNP.buildbin-libdir beadarraySNP_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL beadarraySNP_1.50.0.zip && rm beadarraySNP_1.50.0.tar.gz beadarraySNP_1.50.0.zip |
| StartedAt: 2019-10-15 19:02:35 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:04:20 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 104.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/beadarraySNP_1.50.0.tar.gz && rm -rf beadarraySNP.buildbin-libdir && mkdir beadarraySNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=beadarraySNP.buildbin-libdir beadarraySNP_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL beadarraySNP_1.50.0.zip && rm beadarraySNP_1.50.0.tar.gz beadarraySNP_1.50.0.zip
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install for i386
* installing *source* package 'beadarraySNP' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'beadarraySNP'
finding HTML links ... done
BeadstudioQC html
CopynumberConversion html
Datasets html
GenomicReports html
GetBeadStudioSampleNames html
PolarTransforms html
QCIllumina-class html
Sample_Map2Samplesheet html
SnpSetSegments-class html
finding level-2 HTML links ... done
alterCN html
arrayType html
backgroundCorrect.SNP html
backgroundEstimate html
calculateLOH html
calculateQCarray html
class.SnpSetIllumina html
compareGenotypes html
createCNSummary html
dist.GT html
getDNAindex html
heterozygosity html
heterozygousSNPs html
interactiveCNselect html
normalizeBetweenAlleles.SNP html
normalizeBetweenSubsamples.SNP html
normalizeLoci.SNP html
normalizeWithinArrays.SNP html
pdfChromosomesSmoothCopyNumber html
pdfQC html
plotGoldenGate4OPA html
plotQC html
read.SnpSetIllumina html
removeLowQualityProbes html
removeLowQualitySamples html
renameOPA html
reportGenotypeSegmentation html
reportSamplePanelQC-methods html
segmentate html
setRealCN html
smoothed.intensity html
standardNormalization html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'beadarraySNP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'beadarraySNP' as beadarraySNP_1.50.0.zip
* DONE (beadarraySNP)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'beadarraySNP' successfully unpacked and MD5 sums checked