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BUILD report for TSSi on malbec2

This page was generated on 2019-10-16 12:00:11 -0400 (Wed, 16 Oct 2019).

Package 1686/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TSSi 1.30.0
Julian Gehring
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/TSSi
Branch: RELEASE_3_9
Last Commit: e458ff2
Last Changed Date: 2019-05-02 11:53:28 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: TSSi
Version: 1.30.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TSSi
StartedAt: 2019-10-15 20:10:57 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:11:18 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 21.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TSSi
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* checking for file ‘TSSi/DESCRIPTION’ ... OK
* preparing ‘TSSi’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘TSSi.Rnw’ using Sweave
Warning: Package 'TSSi' is deprecated and will be removed from
  Bioconductor version 3.10

Attaching package: ‘TSSi’

The following object is masked from ‘package:graphics’:

    segments


Error: processing vignette 'TSSi.Rnw' failed with diagnostics:
 chunk 14 (label = convert_iranges) 
Error : RangedData objects are deprecated and the coercion method
  from data.frame or DataTable to RangedData is now
  defunct. Please migrate your code to use GRanges or
  GRangesList objects instead. See IMPORTANT NOTE in
  ?RangedData

--- failed re-building ‘TSSi.Rnw’

SUMMARY: processing the following file failed:
  ‘TSSi.Rnw’

Error: Vignette re-building failed.
Execution halted