Julian Gehring
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/SomaticSignatures |
| Branch: RELEASE_3_9 |
| Last Commit: dbedc30 |
| Last Changed Date: 2019-05-02 11:53:47 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:29:09 -0400 (Wed, 16 Oct 2019).
| Package 1555/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SomaticSignatures 2.20.0 Julian Gehring
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SomaticSignatures |
| Version: 2.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SomaticSignatures_2.20.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.20.0.zip && rm SomaticSignatures_2.20.0.tar.gz SomaticSignatures_2.20.0.zip |
| StartedAt: 2019-10-15 21:03:46 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 21:05:23 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 97.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SomaticSignatures_2.20.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.20.0.zip && rm SomaticSignatures_2.20.0.tar.gz SomaticSignatures_2.20.0.zip
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install for i386
* installing *source* package 'SomaticSignatures' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SomaticSignatures'
finding HTML links ... done
MutationalSignatures-class html
SomaticSignatures-package html
cluster-spetrum html
decomposition-functions html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgB4MXO/R.INSTALL18905e7f3f7c/SomaticSignatures/man/decomposition-functions.Rd:75: file link 'NMF' in package 'NMF' does not exist and so has been treated as a topic
gc html
granges-utils html
finding level-2 HTML links ... done
hs-chrs html
kmers-data html
kmers html
motif-functions html
mutation-context html
mutation-distribution html
mutational-normalization html
mutational-plots html
mutational-signatures html
mutect html
number-signatures html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgB4MXO/R.INSTALL18905e7f3f7c/SomaticSignatures/man/number-signatures.Rd:98: file link 'evar' in package 'NMF' does not exist and so has been treated as a topic
sca-data html
signature-plot-functions html
signatures21-data html
utils html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SomaticSignatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SomaticSignatures' as SomaticSignatures_2.20.0.zip
* DONE (SomaticSignatures)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'SomaticSignatures' successfully unpacked and MD5 sums checked