Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:28:39 -0400 (Tue, 09 Apr 2019).
Package 689/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GOSim 1.21.0 Holger Froehlich
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
Package: GOSim |
Version: 1.21.0 |
Command: rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSim_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSim.buildbin-libdir |
StartedAt: 2019-04-09 05:30:08 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 05:31:16 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 68.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GOSim_1.21.0.tgz |
PackageFileSize: 517.9 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSim_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSim.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GOSim.buildbin-libdir GOSim_1.21.0.tar.gz' >>>>>>> * installing *source* package ‘GOSim’ ... ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -fPIC -Wall -g -O2 -c OAWrapper.cpp -o OAWrapper.o Loading required package: Rcpp In file included from OAWrapper.cpp:10: In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include/Rcpp.h:27: In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c hungarian2.c -o hungarian2.o Loading required package: Rcpp clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GOSim.so OAWrapper.o hungarian2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation Loading required package: Rcpp installing to /Users/biocbuild/bbs-3.9-bioc/meat/GOSim.buildbin-libdir/GOSim/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (GOSim) >>>>>>> >>>>>>> FIXING LINKS FOR GOSim.buildbin-libdir/GOSim/libs//GOSim.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so"