Package: FlowSOM

Version: 1.16.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/FlowSOM_1.16.0.tar.gz && rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL FlowSOM_1.16.0.zip && rm FlowSOM_1.16.0.tar.gz FlowSOM_1.16.0.zip

StartedAt: 2019-10-15 19:29:34 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 19:30:47 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 72.7 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/FlowSOM_1.16.0.tar.gz && rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL FlowSOM_1.16.0.zip && rm FlowSOM_1.16.0.tar.gz FlowSOM_1.16.0.zip
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install for i386

* installing *source* package 'FlowSOM' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c som.c -o som.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/FlowSOM.buildbin-libdir/00LOCK-FlowSOM/00new/FlowSOM/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'FlowSOM'
    finding HTML links ... done
    AddFlowFrame                            html  
    AggregateFlowFrames                     html  
    BuildMST                                html  
    BuildSOM                                html  
    CountGroups                             html  
    Dist.MST                                html  
    FMeasure                                html  
    FlowSOM                                 html  
    FlowSOMSubset                           html  
    Initialize                              html  
    MapDataToCodes                          html  
    MetaClustering                          html  
    NewData                                 html  
    PlotCenters                             html  
    PlotClusters2D                          html  
    PlotGroups                              html  
    PlotMarker                              html  
    PlotNode                                html  
    PlotNumbers                             html  
    PlotPies                                html  
    PlotStars                               html  
    PlotVariable                            html  
    ProcessGatingML                         html  
    finding level-2 HTML links ... done

    Purity                                  html  
    QueryStarPlot                           html  
    ReadInput                               html  
    SOM                                     html  
    SaveClustersToFCS                       html  
    UpdateNodeSize                          html  
    computeBackgroundColor                  html  
    metaClustering_consensus                html  
    plotStarLegend                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'FlowSOM' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c som.c -o som.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/FlowSOM.buildbin-libdir/FlowSOM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FlowSOM' as FlowSOM_1.16.0.zip
* DONE (FlowSOM)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'FlowSOM' successfully unpacked and MD5 sums checked