Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:33:19 -0400 (Wed, 16 Oct 2019).
Package 126/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
BEclear 2.0.0 David Rasp
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: BEclear |
Version: 2.0.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BEclear_2.0.0.tar.gz && rm -rf BEclear.buildbin-libdir && mkdir BEclear.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BEclear.buildbin-libdir BEclear_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BEclear_2.0.0.zip && rm BEclear_2.0.0.tar.gz BEclear_2.0.0.zip |
StartedAt: 2019-10-15 19:25:17 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 19:26:45 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 88.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BEclear_2.0.0.tar.gz && rm -rf BEclear.buildbin-libdir && mkdir BEclear.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BEclear.buildbin-libdir BEclear_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BEclear_2.0.0.zip && rm BEclear_2.0.0.tar.gz BEclear_2.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 206k 100 206k 0 0 1680k 0 --:--:-- --:--:-- --:--:-- 1779k install for i386 * installing *source* package 'BEclear' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c localLoss.cpp -o localLoss.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BEclear.dll tmp.def RcppExports.o localLoss.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BEclear.buildbin-libdir/00LOCK-BEclear/00new/BEclear/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help Loading required namespace: BEclear *** installing help indices converting help for package 'BEclear' finding HTML links ... done BEclear-example-methylation-data html BEclear-example-sample-data html BEclear-package html calcBatchEffects html calcBatchEffectsForBatch html calcBlockFrame html calcPositions html calcScore html calcSummary html clearBEgenes html combineBlocks html correctBatchEffect html countValuesToPredict html ex.corrected.data html findOutsideValues html gdepoch html imputeMissingData html imputeMissingDataForBlock html localLoss html loss html makeBoxplot html preprocessBEclear html replaceOutsideValues html runGradientDescent html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BEclear' ... ** libs C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c localLoss.cpp -o localLoss.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BEclear.dll tmp.def RcppExports.o localLoss.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BEclear.buildbin-libdir/BEclear/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'BEclear' as BEclear_2.0.0.zip * DONE (BEclear) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'BEclear' successfully unpacked and MD5 sums checked