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INSTALL report for BEclear on tokay2

This page was generated on 2019-10-16 12:33:19 -0400 (Wed, 16 Oct 2019).

Package 126/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BEclear 2.0.0
David Rasp
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/BEclear
Branch: RELEASE_3_9
Last Commit: 674f9e6
Last Changed Date: 2019-05-02 11:53:55 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BEclear
Version: 2.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BEclear_2.0.0.tar.gz && rm -rf BEclear.buildbin-libdir && mkdir BEclear.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BEclear.buildbin-libdir BEclear_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BEclear_2.0.0.zip && rm BEclear_2.0.0.tar.gz BEclear_2.0.0.zip
StartedAt: 2019-10-15 19:25:17 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:26:45 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 88.7 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BEclear_2.0.0.tar.gz && rm -rf BEclear.buildbin-libdir && mkdir BEclear.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BEclear.buildbin-libdir BEclear_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BEclear_2.0.0.zip && rm BEclear_2.0.0.tar.gz BEclear_2.0.0.zip
###
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100  206k  100  206k    0     0  1680k      0 --:--:-- --:--:-- --:--:-- 1779k

install for i386

* installing *source* package 'BEclear' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c localLoss.cpp -o localLoss.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BEclear.dll tmp.def RcppExports.o localLoss.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BEclear.buildbin-libdir/00LOCK-BEclear/00new/BEclear/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: BEclear
*** installing help indices
  converting help for package 'BEclear'
    finding HTML links ... done
    BEclear-example-methylation-data        html  
    BEclear-example-sample-data             html  
    BEclear-package                         html  
    calcBatchEffects                        html  
    calcBatchEffectsForBatch                html  
    calcBlockFrame                          html  
    calcPositions                           html  
    calcScore                               html  
    calcSummary                             html  
    clearBEgenes                            html  
    combineBlocks                           html  
    correctBatchEffect                      html  
    countValuesToPredict                    html  
    ex.corrected.data                       html  
    findOutsideValues                       html  
    gdepoch                                 html  
    imputeMissingData                       html  
    imputeMissingDataForBlock               html  
    localLoss                               html  
    loss                                    html  
    makeBoxplot                             html  
    preprocessBEclear                       html  
    replaceOutsideValues                    html  
    runGradientDescent                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BEclear' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c localLoss.cpp -o localLoss.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BEclear.dll tmp.def RcppExports.o localLoss.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BEclear.buildbin-libdir/BEclear/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BEclear' as BEclear_2.0.0.zip
* DONE (BEclear)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BEclear' successfully unpacked and MD5 sums checked