Olivier Gevaert
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/AMARETTO |
| Branch: RELEASE_3_9 |
| Last Commit: a67539e |
| Last Changed Date: 2019-05-02 11:54:14 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:43:45 -0400 (Wed, 16 Oct 2019).
| Package 47/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| AMARETTO 1.0.0 Olivier Gevaert
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: AMARETTO |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/AMARETTO_1.0.0.tar.gz && rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL AMARETTO_1.0.0.zip && rm AMARETTO_1.0.0.tar.gz AMARETTO_1.0.0.zip |
| StartedAt: 2019-10-15 20:13:36 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:14:47 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 70.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/AMARETTO_1.0.0.tar.gz && rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL AMARETTO_1.0.0.zip && rm AMARETTO_1.0.0.tar.gz AMARETTO_1.0.0.zip
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install for i386
* installing *source* package 'AMARETTO' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'AMARETTO'
finding HTML links ... done
AMARETTO_CreateModuleData html
AMARETTO_CreateRegulatorPrograms html
AMARETTO_Download html
AMARETTO_EvaluateTestSet html
AMARETTO_ExportResults html
AMARETTO_HTMLreport html
AMARETTO_Initialize html
AMARETTO_LarsenBased html
AMARETTO_LearnRegulatoryProgramsLarsen
html
AMARETTO_Preprocess html
AMARETTO_ReassignGenesToClusters html
AMARETTO_Run html
AMARETTO_VisualizeModule html
BatchData html
Beta.NA html
ComBat_NoFiles html
CreateRegulatorData html
Driver_Genes html
FindTranscriptionallyPredictive_CNV html
GeneSetDescription html
GmtFromModules html
HyperGTestGeneEnrichment html
L html
Lambda_Sequence html
Preprocess_MAdata html
ProcessedDataLIHC html
Save_CancerSite html
TCGA_BatchCorrection_MolecularData html
TCGA_GENERIC_BatchCorrection html
TCGA_GENERIC_CheckBatchEffect html
TCGA_GENERIC_CleanUpSampleNames html
TCGA_GENERIC_GetSampleGroups html
TCGA_GENERIC_MergeData html
TCGA_Load_GISTICdata html
TCGA_Load_MolecularData html
aprior html
bprior html
build.design html
cacheResource html
computeGisticURL html
design.mat html
filter.absent html
geneFiltering html
get_firehoseData html
int.eprior html
it.sol html
list.batch html
postmean html
postvar html
printf html
readGMT html
trim.dat html
write_gct html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'AMARETTO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AMARETTO' as AMARETTO_1.0.0.zip
* DONE (AMARETTO)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'AMARETTO' successfully unpacked and MD5 sums checked