Bioconductor Package Maintainer
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/zlibbioc |
| Branch: master |
| Last Commit: 4db9a65 |
| Last Changed Date: 2018-10-30 11:54:29 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:59:21 -0400 (Tue, 09 Apr 2019).
| Package 1703/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| zlibbioc 1.29.0 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: zlibbioc |
| Version: 1.29.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/zlibbioc_1.29.0.tar.gz && rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.29.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL zlibbioc_1.29.0.zip && rm zlibbioc_1.29.0.tar.gz zlibbioc_1.29.0.zip |
| StartedAt: 2019-04-08 19:04:31 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 19:06:52 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 141.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/zlibbioc_1.29.0.tar.gz && rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.29.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL zlibbioc_1.29.0.zip && rm zlibbioc_1.29.0.tar.gz zlibbioc_1.29.0.zip
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install for i386
* installing *source* package 'zlibbioc' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include" "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386"
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ3If9e/R.INSTALL1aec5f453243/zlibbioc/src/zlib-1.2.5'
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
C:/Rtools/mingw_32/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o
C:/Rtools/mingw_32/bin/windres --define GCC_WINDRES --target=pe-i386 -o zlibrc.o win32/zlib1.rc
C:/Rtools/mingw_32/bin/gcc -m32 -shared -Wl,--out-implib,libzbiocdll.a \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o
C:/Rtools/mingw_32/bin/strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ3If9e/R.INSTALL1aec5f453243/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
"C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include"
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_init_zlibbioc.c -o R_init_zlibbioc.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'zlibbioc'
finding HTML links ... done
pkgconfig html
zlibbioc-package html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'zlibbioc' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOm5mYx/R.INSTALL18945afd61da/zlibbioc/src/zlib-1.2.5'
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
C:/Rtools/mingw_64/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o
C:/Rtools/mingw_64/bin/windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc
C:/Rtools/mingw_64/bin/gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o
C:/Rtools/mingw_64/bin/strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOm5mYx/R.INSTALL18945afd61da/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
"C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_init_zlibbioc.c -o R_init_zlibbioc.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zlibbioc' as zlibbioc_1.29.0.zip
* DONE (zlibbioc)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'zlibbioc' successfully unpacked and MD5 sums checked