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INSTALL report for treeio on tokay2

This page was generated on 2019-04-09 12:28:35 -0400 (Tue, 09 Apr 2019).

Package 1635/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
treeio 1.7.5
Guangchuang Yu
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/treeio
Branch: master
Last Commit: ab96904
Last Changed Date: 2019-04-07 22:29:20 -0400 (Sun, 07 Apr 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK YES, new version is higher than in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK YES, new version is higher than in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK YES, new version is higher than in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: treeio
Version: 1.7.5
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/treeio_1.7.5.tar.gz && rm -rf treeio.buildbin-libdir && mkdir treeio.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=treeio.buildbin-libdir treeio_1.7.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL treeio_1.7.5.zip && rm treeio_1.7.5.tar.gz treeio_1.7.5.zip
StartedAt: 2019-04-08 18:54:56 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:56:14 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 78.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/treeio_1.7.5.tar.gz && rm -rf treeio.buildbin-libdir && mkdir treeio.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=treeio.buildbin-libdir treeio_1.7.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL treeio_1.7.5.zip && rm treeio_1.7.5.tar.gz treeio_1.7.5.zip
###
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100  499k  100  499k    0     0  4431k      0 --:--:-- --:--:-- --:--:-- 4713k

install for i386

* installing *source* package 'treeio' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'treeio'
    finding HTML links ... done
    Nnode.treedata                          html  
    as.treedata                             html  
    beast-mrbayes-parser                    html  
    drop.tip-methods                        html  
    get-placements                          html  
    get.tree                                html  
    get.treetext-methods                    html  
    getNodeNum                              html  
    is.ggtree                               html  
    isTip                                   html  
    jplace-class                            html  
    label_branch_paml                       html  
    mask                                    html  
    merge_tree                              html  
    phyPML                                  html  
    print.beastList                         html  
    raxml2nwk                               html  
    read-jtree                              html  
    read.astral                             html  
    read.codeml                             html  
    read.codeml_mlc                         html  
    read.fasta                              html  
    read.hyphy                              html  
    read.hyphy.seq                          html  
    read.iqtree                             html  
    read.jplace                             html  
    read.newick                             html  
    read.nhx                                html  
    read.paml_rst                           html  
    read.phylip                             html  
    read.phylip.seq                         html  
    read.phylip.tree                        html  
    read.phyloT                             html  
    read.r8s                                html  
    read.raxml                              html  
    reexports                               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeQSxku/R.INSTALL10884350257d/treeio/man/reexports.Rd:35: file link 'Nnode' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeQSxku/R.INSTALL10884350257d/treeio/man/reexports.Rd:35: file link 'Ntip' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeQSxku/R.INSTALL10884350257d/treeio/man/reexports.Rd:35: file link 'is.rooted' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeQSxku/R.INSTALL10884350257d/treeio/man/reexports.Rd:37: file link 'full_join' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeQSxku/R.INSTALL10884350257d/treeio/man/reexports.Rd:39: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeQSxku/R.INSTALL10884350257d/treeio/man/reexports.Rd:41: file link 'data_frame' in package 'tibble' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeQSxku/R.INSTALL10884350257d/treeio/man/reexports.Rd:43: file link 'get.fields' in package 'tidytree' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeQSxku/R.INSTALL10884350257d/treeio/man/reexports.Rd:43: file link 'get.data' in package 'tidytree' does not exist and so has been treated as a topic
    rename_taxa                             html  
    rescale_tree                            html  
    root-method                             html  
    taxa_rename                             html  
    tree_subset                             html  
    write-jtree                             html  
    write.beast                             html  
    write.jplace                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'treeio' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'treeio' as treeio_1.7.5.zip
* DONE (treeio)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'treeio' successfully unpacked and MD5 sums checked