Package: sitePath

Version: 0.99.24

Command: rm -rf sitePath.buildbin-libdir && mkdir sitePath.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sitePath.buildbin-libdir sitePath_0.99.24.tar.gz

StartedAt: 2019-04-09 08:59:27 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 09:00:46 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 79.5 seconds

RetCode: 0

Status:  OK

PackageFile: sitePath_0.99.24.zip

PackageFileSize: 872.7 KiB

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### Running command:
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###   rm -rf sitePath.buildbin-libdir && mkdir sitePath.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sitePath.buildbin-libdir sitePath_0.99.24.tar.gz
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install for i386

* installing *source* package 'sitePath' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c exportFunc.cpp -o exportFunc.o
exportFunc.cpp: In function 'Rcpp::ListOf<Rcpp::Vector<13> > minimizeEntropy(const Rcpp::ListOf<Rcpp::Vector<13> >&)':
exportFunc.cpp:153:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (unsigned int j = 0; j < aa.size(); ++j) {
                                    ^
exportFunc.cpp:243:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (unsigned int j = 0; j < aa.size(); ++j) {
                                        ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c treemer.cpp -o treemer.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c util.cpp -o util.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o sitePath.dll tmp.def RcppExports.o exportFunc.o treemer.o util.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sitePath.buildbin-libdir/00LOCK-sitePath/00new/sitePath/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sitePath'
    finding HTML links ... done
    addMSA                                  html  
    extractTips                             html  
    findSites                               html  
    h3n2_align                              html  
    h3n2_align_reduced                      html  
    h3n2_tree                               html  
    h3n2_tree_reduced                       html  
    plot.lineagePath                        html  
    plotSingleSite                          html  
    pre-assessment                          html  
    treemer                                 html  
    finding level-2 HTML links ... done

    zikv_align                              html  
    zikv_align_reduced                      html  
    zikv_tree                               html  
    zikv_tree_reduced                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sitePath' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c exportFunc.cpp -o exportFunc.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c treemer.cpp -o treemer.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c util.cpp -o util.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o sitePath.dll tmp.def RcppExports.o exportFunc.o treemer.o util.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sitePath.buildbin-libdir/sitePath/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sitePath' as sitePath_0.99.24.zip
* DONE (sitePath)