Package: sevenbridges

Version: 1.13.5

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sevenbridges.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings sevenbridges_1.13.5.tar.gz

StartedAt: 2019-04-09 05:53:53 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 05:58:58 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 304.8 seconds

RetCode: 0

Status:  OK

CheckDir: sevenbridges.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sevenbridges.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings sevenbridges_1.13.5.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/sevenbridges.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sevenbridges/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sevenbridges' version '1.13.5'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sevenbridges' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
Flow        50.38   0.00   50.47
Tool-class  12.42   0.01   12.57
link_what    8.70   0.02    8.71
link         6.55   0.00    6.55
convert_app  5.53   0.00    5.53
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
Flow        63.39   0.02   63.40
Tool-class  18.99   0.01   19.00
link_what   12.24   0.00   12.25
link         9.53   0.00    9.53
convert_app  7.14   0.00    7.14
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sevenbridges_1.13.5.tar.gz && rm -rf sevenbridges.buildbin-libdir && mkdir sevenbridges.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sevenbridges.buildbin-libdir sevenbridges_1.13.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sevenbridges_1.13.5.zip && rm sevenbridges_1.13.5.tar.gz sevenbridges_1.13.5.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  889k  100  889k    0     0  1383k      0 --:--:-- --:--:-- --:--:-- 1400k

install for i386

* installing *source* package 'sevenbridges' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sevenbridges'
    finding HTML links ... done
    App-class                               html  
    Auth-class                              html  
    Binding                                 html  
    CCBList                                 html  
    CWL                                     html  
    CommandInputParameter-class             html  
    CommandInputSchema-class                html  
    CommandLineBinding-class                html  
    CommandLineTool                         html  
    CommandOutputBinding-class              html  
    CommandOutputParameter-class            html  
    CommandOutputSchema-class               html  
    DSCList                                 html  
    Enum                                    html  
    Expression-class                        html  
    ExpressionTool-class                    html  
    FS-class                                html  
    File-class                              html  
    Files-class                             html  
    Flow                                    html  
    Handler-class                           html  
    Item-class                              html  
    Metadata                                html  
    Parameter                               html  
    Process                                 html  
    ProcessRequirement                      html  
    Schema                                  html  
    TaskHook                                html  
    Tool-class                              html  
    Workflow                                html  
    WorkflowStep                            html  
    addIdNum                                html  
    api                                     html  
    as-methods                              html  
    batch                                   html  
    cli_list_projects                       html  
    cli_list_tags                           html  
    cli_upload                              html  
    convert_app                             html  
    cwl-utils                               html  
    delete-methods                          html  
    download-methods                        html  
    get_token                               html  
    get_uploader                            html  
    input_output_matrix                     html  
    link                                    html  
    link_what                               html  
    project_details                         html  
    project_members                         html  
    requirements                            html  
    response-methods                        html  
    sbg_get_env                             html  
    sbg_set_env                             html  
    setListClass                            html  
    set_test_env                            html  
    sevenbridges-package                    html  
    shorthand-cwl                           html  
    status_check                            html  
    tag-methods                             html  
    test_tool_bunny                         html  
    test_tool_cwlrun                        html  
    test_tool_rabix                         html  
    upload_complete_all                     html  
    upload_complete_part                    html  
    upload_delete                           html  
    upload_info                             html  
    upload_info_part                        html  
    upload_init                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sevenbridges' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sevenbridges' as sevenbridges_1.13.5.zip
* DONE (sevenbridges)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'sevenbridges' successfully unpacked and MD5 sums checked

R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library("testthat")
> library("sevenbridges")
> test_check("sevenbridges")
== testthat results  ===========================================================
OK: 0 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
   2.84    0.20    3.03 

R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library("testthat")
> library("sevenbridges")
> test_check("sevenbridges")
== testthat results  ===========================================================
OK: 0 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
   2.54    0.18    2.71