Koki Tsuyuzaki
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/scTensor |
| Branch: master |
| Last Commit: feb6b7d |
| Last Changed Date: 2019-01-02 04:07:13 -0400 (Wed, 02 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:43:08 -0400 (Tue, 09 Apr 2019).
| Package 1451/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| scTensor 0.99.22 Koki Tsuyuzaki
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: scTensor |
| Version: 0.99.22 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scTensor.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings scTensor_0.99.22.tar.gz |
| StartedAt: 2019-04-09 05:49:31 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 05:59:21 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 590.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: scTensor.Rcheck |
| Warnings: 1 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scTensor.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings scTensor_0.99.22.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/scTensor.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'scTensor/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'scTensor' version '0.99.22'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'scTensor' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.simulateDropoutCounts: no visible binding for global variable '.v'
.simulateDropoutCounts: no visible binding for global variable '.m'
Undefined global functions or variables:
.m .v
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Output for data("m", package = "scTensor"):
No dataset created in 'envir'
Output for data("v", package = "scTensor"):
No dataset created in 'envir'
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/scTensor.Rcheck/00check.log'
for details.
scTensor.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/scTensor_0.99.22.tar.gz && rm -rf scTensor.buildbin-libdir && mkdir scTensor.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scTensor.buildbin-libdir scTensor_0.99.22.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL scTensor_0.99.22.zip && rm scTensor_0.99.22.tar.gz scTensor_0.99.22.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1984k 100 1984k 0 0 7679k 0 --:--:-- --:--:-- --:--:-- 7908k
install for i386
* installing *source* package 'scTensor' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'show' in package 'scTensor'
** help
*** installing help indices
converting help for package 'scTensor'
finding HTML links ... done
CCSParams-class html
GermMale html
cellCellDecomp html
cellCellRanks html
cellCellReport html
cellCellSetting html
cellCellSimulate html
getParam html
labelGermMale html
m html
newCCSParams html
scTensor-package html
setParam html
tsneGermMale html
v html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'scTensor' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scTensor' as scTensor_0.99.22.zip
* DONE (scTensor)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'scTensor' successfully unpacked and MD5 sums checked
|
scTensor.Rcheck/tests_i386/testthat.Rout
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("scTensor")
>
> options(testthat.use_colours = FALSE)
>
> test_file("testthat/test_GermMale.R")
v | OK F W S | Context
/ | 0 | GermMale
- | 0 1 | GermMale
x | 0 1 | GermMale
--------------------------------------------------------------------------------
test_GermMale.R:5: failure: (unknown)
dim(GermMale) not equivalent to c(2547, 852).
1/2 mismatches
[1] 242 - 2547 == -2305
--------------------------------------------------------------------------------
== Results =====================================================================
OK: 0
Failed: 1
Warnings: 0
Skipped: 0
> test_file("testthat/test_tsneGermMale.R")
v | OK F W S | Context
/ | 0 | tsneGermMale
- | 1 | tsneGermMale
v | 1 | tsneGermMale
== Results =====================================================================
OK: 1
Failed: 0
Warnings: 0
Skipped: 0
> test_file("testthat/test_labelGermMale.R")
v | OK F W S | Context
/ | 0 | labelGermMale
- | 1 | labelGermMale
v | 1 | labelGermMale
== Results =====================================================================
OK: 1
Failed: 0
Warnings: 0
Skipped: 0
Keep up the good work.
> test_file("testthat/test_cellCellFunctions.R")
v | OK F W S | Context
/ | 0 | cellCellFunctions
- | 1 | cellCellFunctions
\ | 2 | cellCellFunctions
| | 3 | cellCellFunctions
/ | 3 1 | cellCellFunctions
- | 3 2 | cellCellFunctions
\ | 3 3 | cellCellFunctions
x | 3 3 | cellCellFunctions [1.0 s]
--------------------------------------------------------------------------------
test_cellCellFunctions.R:21: failure: (unknown)
is.null(metadata(sce)$lrbase) isn't false.
test_cellCellFunctions.R:22: failure: (unknown)
is.null(metadata(sce)$color) isn't false.
test_cellCellFunctions.R:23: failure: (unknown)
is.null(metadata(sce)$label) isn't false.
--------------------------------------------------------------------------------
== Results =====================================================================
Duration: 1.1 s
OK: 3
Failed: 3
Warnings: 0
Skipped: 0
> test_file("testthat/test_CCSParamsFunctions.R")
v | OK F W S | Context
- | 1 | 0
\ | 2 | 0
| | 3 | 0
/ | 4 | 0
- | 5 | 0
\ | 6 | 0
| | 7 | 0
/ | 8 | 0
- | 9 | 0
\ | 10 | 0
| | 11 | 0
== Results =====================================================================
OK: 11
Failed: 0
Warnings: 0
Skipped: 0
>
> proc.time()
user system elapsed
19.25 2.10 21.81
|
scTensor.Rcheck/tests_x64/testthat.Rout
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("scTensor")
>
> options(testthat.use_colours = FALSE)
>
> test_file("testthat/test_GermMale.R")
v | OK F W S | Context
/ | 0 | GermMale
- | 0 1 | GermMale
x | 0 1 | GermMale
--------------------------------------------------------------------------------
test_GermMale.R:5: failure: (unknown)
dim(GermMale) not equivalent to c(2547, 852).
1/2 mismatches
[1] 242 - 2547 == -2305
--------------------------------------------------------------------------------
== Results =====================================================================
Duration: 0.2 s
OK: 0
Failed: 1
Warnings: 0
Skipped: 0
> test_file("testthat/test_tsneGermMale.R")
v | OK F W S | Context
/ | 0 | tsneGermMale
- | 1 | tsneGermMale
v | 1 | tsneGermMale
== Results =====================================================================
OK: 1
Failed: 0
Warnings: 0
Skipped: 0
> test_file("testthat/test_labelGermMale.R")
v | OK F W S | Context
/ | 0 | labelGermMale
- | 1 | labelGermMale
v | 1 | labelGermMale
== Results =====================================================================
OK: 1
Failed: 0
Warnings: 0
Skipped: 0
> test_file("testthat/test_cellCellFunctions.R")
v | OK F W S | Context
/ | 0 | cellCellFunctions
- | 1 | cellCellFunctions
\ | 2 | cellCellFunctions
| | 3 | cellCellFunctions
/ | 3 1 | cellCellFunctions
- | 3 2 | cellCellFunctions
\ | 3 3 | cellCellFunctions
x | 3 3 | cellCellFunctions [0.5 s]
--------------------------------------------------------------------------------
test_cellCellFunctions.R:21: failure: (unknown)
is.null(metadata(sce)$lrbase) isn't false.
test_cellCellFunctions.R:22: failure: (unknown)
is.null(metadata(sce)$color) isn't false.
test_cellCellFunctions.R:23: failure: (unknown)
is.null(metadata(sce)$label) isn't false.
--------------------------------------------------------------------------------
== Results =====================================================================
Duration: 0.5 s
OK: 3
Failed: 3
Warnings: 0
Skipped: 0
> test_file("testthat/test_CCSParamsFunctions.R")
v | OK F W S | Context
- | 1 | 0
\ | 2 | 0
| | 3 | 0
/ | 4 | 0
- | 5 | 0
\ | 6 | 0
| | 7 | 0
/ | 8 | 0
- | 9 | 0
\ | 10 | 0
| | 11 | 0
== Results =====================================================================
OK: 11
Failed: 0
Warnings: 0
Skipped: 0
>
> proc.time()
user system elapsed
20.40 1.09 21.51
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scTensor.Rcheck/examples_i386/scTensor-Ex.timings
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scTensor.Rcheck/examples_x64/scTensor-Ex.timings
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