Stuart Lee
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/plyranges |
| Branch: master |
| Last Commit: d88cca8 |
| Last Changed Date: 2019-03-09 21:03:53 -0400 (Sat, 09 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:37:50 -0400 (Tue, 09 Apr 2019).
| Package 1202/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| plyranges 1.3.4 Stuart Lee
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: plyranges |
| Version: 1.3.4 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/plyranges_1.3.4.tar.gz && rm -rf plyranges.buildbin-libdir && mkdir plyranges.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plyranges.buildbin-libdir plyranges_1.3.4.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL plyranges_1.3.4.zip && rm plyranges_1.3.4.tar.gz plyranges_1.3.4.zip |
| StartedAt: 2019-04-08 20:01:43 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 20:03:32 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 109.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/plyranges_1.3.4.tar.gz && rm -rf plyranges.buildbin-libdir && mkdir plyranges.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plyranges.buildbin-libdir plyranges_1.3.4.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL plyranges_1.3.4.zip && rm plyranges_1.3.4.tar.gz plyranges_1.3.4.zip
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100 1393k 100 1393k 0 0 18.4M 0 --:--:-- --:--:-- --:--:-- 20.0M
install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'plyranges/inst/NEWS' to 'plyranges/NEWS.md'
* installing *source* package 'plyranges' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'plyranges'
finding HTML links ... done
as_ranges html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/as_ranges.Rd:32: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/as_ranges.Rd:32: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
compute_coverage html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/compute_coverage.Rd:37: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/compute_coverage.Rd:37: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
element-setops html
filter-ranges html
flank-ranges html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/flank-ranges.Rd:59: file link 'flank' in package 'GenomicRanges' does not exist and so has been treated as a topic
group_by-ranges html
io-bam-read html
io-bed-read html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/io-bed-read.Rd:75: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
io-bed-write html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/io-bed-write.Rd:57: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
io-bigwig-read html
io-bigwig-write html
io-gff-read html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/io-gff-read.Rd:57: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
io-gff-write html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/io-gff-write.Rd:44: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
io-wig-read html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/io-wig-read.Rd:36: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
io-wig-write html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/io-wig-write.Rd:23: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
mutate-ranges html
n html
n_distinct html
overlap-joins html
overscope_ranges html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/overscope_ranges.Rd:24: file link 'new_data_mask' in package 'rlang' does not exist and so has been treated as a topic
plyranges-package html
ranges-anchor html
ranges-arrange html
ranges-bind html
ranges-chop html
ranges-class html
ranges-construct html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/ranges-construct.Rd:50: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
ranges-count-overlaps html
ranges-deferred html
ranges-disjoin html
ranges-filter-overlaps html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/ranges-filter-overlaps.Rd:60: file link 'subsetByOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
ranges-follow html
ranges-info html
ranges-interweave html
ranges-nearest html
ranges-overlaps-self html
ranges-overlaps html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/ranges-overlaps.Rd:122: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/ranges-overlaps.Rd:122: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
ranges-pairs html
ranges-precede html
ranges-reduce html
ranges-select html
ranges-setops html
ranges-setters html
ranges-summarise html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/ranges-summarise.Rd:15: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
ranges-tile html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/ranges-tile.Rd:52: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/ranges-tile.Rd:52: file link 'tile' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/ranges-tile.Rd:54: file link 'slidingWindows' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/ranges-tile.Rd:54: file link 'slidingWindows' in package 'GenomicRanges' does not exist and so has been treated as a topic
ranges-unnest html
shift-ranges html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/shift-ranges.Rd:49: file link 'shift' in package 'IRanges' does not exist and so has been treated as a topic
stretch html
tidyverse-reexports html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/tidyverse-reexports.Rd:29: file link 'ungroup' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/tidyverse-reexports.Rd:29: file link 'group_vars' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/tidyverse-reexports.Rd:29: file link 'summarize' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/tidyverse-reexports.Rd:31: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/tidyverse-reexports.Rd:33: file link '!!!' in package 'rlang' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6J1HBI/R.INSTALL21301ceb4514/plyranges/man/tidyverse-reexports.Rd:33: file link '!!' in package 'rlang' does not exist and so has been treated as a topic
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'plyranges/inst/NEWS' to 'plyranges/NEWS.md'
* installing *source* package 'plyranges' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plyranges' as plyranges_1.3.4.zip
* DONE (plyranges)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'plyranges' successfully unpacked and MD5 sums checked