Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:25:48 -0400 (Tue, 09 Apr 2019).
Package 869/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
lol 1.31.0 Yinyin Yuan
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: lol |
Version: 1.31.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:lol.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings lol_1.31.0.tar.gz |
StartedAt: 2019-04-09 01:51:42 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 01:53:11 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 89.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: lol.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:lol.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings lol_1.31.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/lol.Rcheck’ * using R Under development (unstable) (2018-11-27 r75683) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘lol/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘lol’ version ‘1.31.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘lol’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘Matrix’ ‘penalized’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' calls to packages already attached by Depends: ‘Matrix’ ‘penalized’ Please remove these calls from your code. * checking S3 generic/method consistency ... NOTE Found the following apparent S3 methods exported but not registered: lasso.cv lasso.multiSplit lasso.simultaneous lasso.stability print.lol print.lolMatrix See section ‘Registering S3 methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'lasso.cv': ‘lasso.cv’ S3 methods shown with full name in documentation object 'lasso.multiSplit': ‘lasso.multiSplit’ S3 methods shown with full name in documentation object 'lasso.simultaneous': ‘lasso.simultaneous’ S3 methods shown with full name in documentation object 'lasso.stability': ‘lasso.stability’ S3 methods shown with full name in documentation object 'print.lol': ‘print.lol’ S3 methods shown with full name in documentation object 'print.lolMatrix': ‘print.lolMatrix’ The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed lmMatrixFit 6.868 0.584 7.531 lol-package 5.643 0.474 6.158 matrixLasso 5.490 0.449 5.976 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See ‘/Users/biocbuild/bbs-3.9-bioc/meat/lol.Rcheck/00check.log’ for details.
lol.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL lol ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘lol’ ... ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (lol)
lol.Rcheck/lol-Ex.timings
name | user | system | elapsed | |
chin07 | 0.138 | 0.022 | 0.163 | |
getLambdaNcoef | 0.194 | 0.020 | 0.219 | |
lasso | 0.659 | 0.094 | 0.757 | |
lasso.cv | 0.688 | 0.089 | 0.780 | |
lasso.multiSplit | 3.070 | 0.027 | 3.127 | |
lasso.simultaneous | 3.482 | 0.065 | 3.583 | |
lasso.stability | 1.922 | 0.035 | 1.973 | |
lmMatrixFit | 6.868 | 0.584 | 7.531 | |
lol-package | 5.643 | 0.474 | 6.158 | |
matrixLasso | 5.490 | 0.449 | 5.976 | |
plotGW | 0.121 | 0.023 | 0.137 | |