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INSTALL report for htSeqTools on tokay2

This page was generated on 2019-04-09 12:40:20 -0400 (Tue, 09 Apr 2019).

Package 761/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
htSeqTools 1.31.1
Oscar Reina
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/htSeqTools
Branch: master
Last Commit: a8920e5
Last Changed Date: 2019-01-04 09:43:17 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: htSeqTools
Version: 1.31.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/htSeqTools_1.31.1.tar.gz && rm -rf htSeqTools.buildbin-libdir && mkdir htSeqTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=htSeqTools.buildbin-libdir htSeqTools_1.31.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL htSeqTools_1.31.1.zip && rm htSeqTools_1.31.1.tar.gz htSeqTools_1.31.1.zip
StartedAt: 2019-04-08 20:26:11 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:27:27 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 75.5 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/htSeqTools_1.31.1.tar.gz && rm -rf htSeqTools.buildbin-libdir && mkdir htSeqTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=htSeqTools.buildbin-libdir htSeqTools_1.31.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL htSeqTools_1.31.1.zip && rm htSeqTools_1.31.1.tar.gz htSeqTools_1.31.1.zip
###
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100 1507k  100 1507k    0     0  19.7M      0 --:--:-- --:--:-- --:--:-- 21.9M

install for i386

* installing *source* package 'htSeqTools' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: possible error in 'countHitsWindow(x, chrLengths = chrLengths, ': unused argument (chrLengths = chrLengths) 
Note: possible error in 'countHitsWindow(x, chrLengths = chrLengths, ': unused argument (chrLengths = chrLengths) 
Note: possible error in 'countHitsWindow(x, chrLengths = chrLengths, ': unused argument (chrLengths = chrLengths) 
Note: possible error in 'extendRanges(x, seqLen = seqLen, ': unused argument (chrLength = chrLength) 
Note: possible error in 'extendRanges(x, seqLen = seqLen, ': unused argument (chrLength = chrLength) 
Note: possible error in 'extendRanges(x, seqLen = seqLen, ': unused argument (chrLength = chrLength) 
Note: possible error in 'extendRanges(x, seqLen = seqLen, ': unused argument (chrLength = chrLength) 
Note: possible error in 'extendRanges(x, seqLen = seqLen, ': unused argument (chrLength = chrLength) 
Note: possible error in 'extendRanges(x, seqLen = seqLen, ': unused argument (chrLength = chrLength) 
** help
*** installing help indices
  converting help for package 'htSeqTools'
    finding HTML links ... done
    alignPeaks                              html  
    cmds                                    html  
    cmdsFit-class                           html  
    cmdsFit                                 html  
    countHitsWindow                         html  
    coverageDiff                            html  
    enrichedChrRegions                      html  
    enrichedPeaks                           html  
    enrichedRegions                         html  
    extendRanges                            html  
    fdrEnrichedCounts                       html  
    filterDuplReads                         html  
    findPeakHeight                          html  
    giniCoverage                            html  
    gridCover-class                         html  
    htSample                                html  
    islandCounts                            html  
    listOverlap                             html  
    mergeRegions                            html  
    plot-methods                            html  
    plotChrRegions                          html  
    regionsCoverage                         html  
    rowLogRegLRT                            html  
    ssdCoverage                             html  
    stdPeakLocation                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'htSeqTools' is deprecated and will be removed from
  Bioconductor version 3.10
** testing if installed package can be loaded from final location
Warning: Package 'htSeqTools' is deprecated and will be removed from
  Bioconductor version 3.10
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'htSeqTools' ...
** testing if installed package can be loaded
Warning: Package 'htSeqTools' is deprecated and will be removed from
  Bioconductor version 3.10
* MD5 sums
packaged installation of 'htSeqTools' as htSeqTools_1.31.1.zip
* DONE (htSeqTools)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'htSeqTools' successfully unpacked and MD5 sums checked