Package: cellTree

Version: 1.13.1

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/cellTree_1.13.1.tar.gz && rm -rf cellTree.buildbin-libdir && mkdir cellTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellTree.buildbin-libdir cellTree_1.13.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL cellTree_1.13.1.zip && rm cellTree_1.13.1.tar.gz cellTree_1.13.1.zip

StartedAt: 2019-04-08 19:00:35 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 19:01:23 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 47.4 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/cellTree_1.13.1.tar.gz && rm -rf cellTree.buildbin-libdir && mkdir cellTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellTree.buildbin-libdir cellTree_1.13.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL cellTree_1.13.1.zip && rm cellTree_1.13.1.tar.gz cellTree_1.13.1.zip
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install for i386

* installing *source* package 'cellTree' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
  converting help for package 'cellTree'
    finding HTML links ... done
    HSMM_lda_model                          html  
    cell.ordering.table                     html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/cell.ordering.table.Rd:10: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    cellTree-package                        html  
    compute.backbone.tree                   html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/compute.backbone.tree.Rd:34: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    compute.go.enrichment                   html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/compute.go.enrichment.Rd:30: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    compute.lda                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/compute.lda.Rd:25: file link 'LDA-class' in package 'topicmodels' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/compute.lda.Rd:69: file link 'LDA' in package 'topicmodels' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/compute.lda.Rd:69: file link 'LDA_Gibbscontrol-class' in package 'topicmodels' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/compute.lda.Rd:69: file link 'CTM_VEMcontrol-class' in package 'topicmodels' does not exist and so has been treated as a topic
    ct.plot.go.dag                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/ct.plot.go.dag.Rd:27: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    ct.plot.grouping                        html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/ct.plot.grouping.Rd:12: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/ct.plot.grouping.Rd:31: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    ct.plot.heatmap                         html  
    ct.plot.topics                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/ct.plot.topics.Rd:12: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpoVjB7Z/R.INSTALL128c6a9630d5/cellTree/man/ct.plot.topics.Rd:27: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    get.cell.dists                          html  
    go.results.to.latex                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package can be loaded from final location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cellTree' ...
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'cellTree' as cellTree_1.13.1.zip
* DONE (cellTree)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'cellTree' successfully unpacked and MD5 sums checked