Package: brainImageR

Version: 1.1.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:brainImageR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings brainImageR_1.1.0.tar.gz

StartedAt: 2019-01-14 01:06:26 -0500 (Mon, 14 Jan 2019)

EndedAt: 2019-01-14 01:07:05 -0500 (Mon, 14 Jan 2019)

EllapsedTime: 39.5 seconds

RetCode: 0

Status:  OK

CheckDir: brainImageR.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:brainImageR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings brainImageR_1.1.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/brainImageR.Rcheck’
* using R Under development (unstable) (2018-11-17 r75624)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘brainImageR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘brainImageR’ version ‘1.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘brainImageR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL brainImageR
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘brainImageR’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (brainImageR)

R Under development (unstable) (2018-11-17 r75624) -- "Unsuffered Consequences"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("brainImageR")


RUNIT TEST PROTOCOL -- Mon Jan 14 01:07:02 2019 
*********************************************** 
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
brainImageR RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  1.011   0.087   1.086 

name	user	system	elapsed
BrainMap	0.002	0.012	0.014
Comp-class	0.004	0.000	0.004
CreateBrain	0.001	0.000	0.001
GetGenes	0.001	0.001	0.001
InABA	0.001	0.000	0.001
PValue.onetail	0.001	0.000	0.001
PlotBrain	0.000	0.001	0.001
PlotEnrich	0.000	0.001	0.001
PlotPred	0	0	0
Pred-class	0.001	0.000	0.001
RandomTissueSummary	0.001	0.000	0.000
SpatialEnrichment	0.001	0.000	0.001
TissueSummary	0.000	0.000	0.001
available_areanames	0.001	0.000	0.001
brainrange	0	0	0
predict_time	0.001	0.000	0.002
reColor	0.000	0.000	0.001
testEnrich	0.001	0.000	0.001
tis_in_region	0.001	0.000	0.001
tis_set	0.001	0.000	0.001
whichtissues	0	0	0