Stephanie M. Gogarten
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/SeqVarTools |
| Branch: master |
| Last Commit: d986786 |
| Last Changed Date: 2019-03-06 18:46:45 -0400 (Wed, 06 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:08:12 -0400 (Tue, 09 Apr 2019).
| Package 1472/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SeqVarTools 1.21.3 Stephanie M. Gogarten
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: SeqVarTools |
| Version: 1.21.3 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SeqVarTools_1.21.3.tar.gz && rm -rf SeqVarTools.buildbin-libdir && mkdir SeqVarTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqVarTools.buildbin-libdir SeqVarTools_1.21.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SeqVarTools_1.21.3.zip && rm SeqVarTools_1.21.3.tar.gz SeqVarTools_1.21.3.zip |
| StartedAt: 2019-04-08 20:00:25 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 20:03:03 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 158.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SeqVarTools_1.21.3.tar.gz && rm -rf SeqVarTools.buildbin-libdir && mkdir SeqVarTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqVarTools.buildbin-libdir SeqVarTools_1.21.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SeqVarTools_1.21.3.zip && rm SeqVarTools_1.21.3.tar.gz SeqVarTools_1.21.3.zip
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install for i386
* installing *source* package 'SeqVarTools' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SeqVarTools'
finding HTML links ... done
Iterator-class html
finding level-2 HTML links ... done
SeqVarData-class html
SeqVarTools-package html
allele-methods html
alleleFrequency html
alternateAlleleDetection html
applyMethod html
chromWithPAR html
countSingletons html
duplicateDiscordance html
getGenotype html
getVariableLengthData html
heterozygosity html
hwe html
imputedDosage html
inbreedCoeff html
isSNV html
isVariant html
meanBySample html
mendelErr html
missingGenotypeRate html
pca html
pedigree html
refFrac html
regression html
setVariantID html
titv html
variantInfo html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SeqVarTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SeqVarTools' as SeqVarTools_1.21.3.zip
* DONE (SeqVarTools)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'SeqVarTools' successfully unpacked and MD5 sums checked