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INSTALL report for Rcwl on tokay2

This page was generated on 2019-04-09 12:44:09 -0400 (Tue, 09 Apr 2019).

Package 1306/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcwl 0.99.17
Qiang Hu
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/Rcwl
Branch: master
Last Commit: eeda203
Last Changed Date: 2019-04-05 10:31:22 -0400 (Fri, 05 Apr 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ ERROR ] ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: Rcwl
Version: 0.99.17
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Rcwl
StartedAt: 2019-04-08 19:28:10 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:29:32 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 81.7 seconds
RetCode: 1
Status:  ERROR  

Command output

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Rcwl
###
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* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
* installing *source* package 'Rcwl' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Rcwl'
    finding HTML links ... done
    InputArrayParam                         html  
    InputParam                              html  
    InputParamList                          html  
    OutputArrayParam                        html  
    OutputParam                             html  
    OutputParamList                         html  
    Rcwl                                    html  
    Step                                    html  
    characterORInputArrayParam-class        html  
    cwlParam-methods                        html  
    cwlParam                                html  
    cwlShiny                                html  
    cwlStepParam                            html  
    plotCWL                                 html  
    plus-cwlStepParam-stepParam-method      html  
    readCWL                                 html  
    runCWL                                  html  
    runCWLBatch                             html  
    runs                                    html  
    short                                   html  
    stepInParam                             html  
    stepInParamList                         html  
    stepParam                               html  
    stepParamList                           html  
    steps                                   html  
    writeCWL                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
*** arch - i386
/usr/bin/which: no cwltool in (/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/R/bin/x64:/cygdrive/c/Rtools/bin:/cygdrive/c/Rtools/mingw_32/bin:/cygdrive/c/Rtools/mingw_64/bin:/usr/bin:/cygdrive/c/Python27:/cygdrive/c/Python27/Scripts:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files (x86)/Pandoc:/cygdrive/c/Program Files/Git/cmd:/cygdrive/c/ProgramData/Oracle/Java/javapath:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files/gs/gs9.20/bin:/cygdrive/c/Perl64/site/bin:/cygdrive/c/Perl64/bin:/cygdrive/c/ClustalO:/cygdrive/c/gtkmm64/bin:/cygdrive/c/Program Files/CMake/bin:/cygdrive/c/Program Files/ggobi:/cygdrive/c/Program Files (x86)/ggobi:/cygdrive/c/Program Files/MiKTeX 2.9/miktex/bin/x64:/cygdrive/c/Program Files/Git LFS)
Warning in system("which cwltool", intern = TRUE) :
  running command 'which cwltool' had status 1
Error: package or namespace load failed for 'Rcwl':
 .onLoad failed in loadNamespace() for 'Rcwl', details:
  call: fun(libname, pkgname)
  error: cwltool is not found, Please install cwltool first!
https://github.com/common-workflow-language/cwltool#install
Error: loading failed
Execution halted
*** arch - x64
/usr/bin/which: no cwltool in (/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/R/bin/x64:/cygdrive/c/Rtools/bin:/cygdrive/c/Rtools/mingw_32/bin:/cygdrive/c/Rtools/mingw_64/bin:/usr/bin:/cygdrive/c/Python27:/cygdrive/c/Python27/Scripts:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files (x86)/Pandoc:/cygdrive/c/Program Files/Git/cmd:/cygdrive/c/ProgramData/Oracle/Java/javapath:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files/gs/gs9.20/bin:/cygdrive/c/Perl64/site/bin:/cygdrive/c/Perl64/bin:/cygdrive/c/ClustalO:/cygdrive/c/gtkmm64/bin:/cygdrive/c/Program Files/CMake/bin:/cygdrive/c/Program Files/ggobi:/cygdrive/c/Program Files (x86)/ggobi:/cygdrive/c/Program Files/MiKTeX 2.9/miktex/bin/x64:/cygdrive/c/Program Files/Git LFS)
Warning in system("which cwltool", intern = TRUE) :
  running command 'which cwltool' had status 1
Error: package or namespace load failed for 'Rcwl':
 .onLoad failed in loadNamespace() for 'Rcwl', details:
  call: fun(libname, pkgname)
  error: cwltool is not found, Please install cwltool first!
https://github.com/common-workflow-language/cwltool#install
Error: loading failed
Execution halted
ERROR: loading failed for 'i386', 'x64'
* removing 'C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcwl'