Stefano Calza
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/LVSmiRNA |
| Branch: master |
| Last Commit: c03ceaa |
| Last Changed Date: 2018-10-30 11:54:29 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:58:34 -0400 (Tue, 09 Apr 2019).
| Package 879/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LVSmiRNA 1.33.0 Stefano Calza
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
| Package: LVSmiRNA |
| Version: 1.33.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/LVSmiRNA_1.33.0.tar.gz && rm -rf LVSmiRNA.buildbin-libdir && mkdir LVSmiRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LVSmiRNA.buildbin-libdir LVSmiRNA_1.33.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL LVSmiRNA_1.33.0.zip && rm LVSmiRNA_1.33.0.tar.gz LVSmiRNA_1.33.0.zip |
| StartedAt: 2019-04-08 19:17:38 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 19:18:37 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 58.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/LVSmiRNA_1.33.0.tar.gz && rm -rf LVSmiRNA.buildbin-libdir && mkdir LVSmiRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LVSmiRNA.buildbin-libdir LVSmiRNA_1.33.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL LVSmiRNA_1.33.0.zip && rm LVSmiRNA_1.33.0.tar.gz LVSmiRNA_1.33.0.zip
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install for i386
* installing *source* package 'LVSmiRNA' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c basic_fns.c -o basic_fns.o
basic_fns.c: In function 'lvs_median':
basic_fns.c:146:7: warning: unused variable 'i' [-Wunused-variable]
int i;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c lvs_rlm.c -o lvs_rlm.o
lvs_rlm.c: In function 'gamma_fit':
lvs_rlm.c:175:30: warning: variable 'converged' set but not used [-Wunused-but-set-variable]
int i,j, rows, cols, iter, converged=0;
^
lvs_rlm.c: In function 'test_gamma_fit':
lvs_rlm.c:286:30: warning: variable 'converged' set but not used [-Wunused-but-set-variable]
int i,j, rows, cols, iter, converged=0;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o LVSmiRNA.dll tmp.def basic_fns.o init.o lvs_rlm.o -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRblas -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/LVSmiRNA.buildbin-libdir/00LOCK-LVSmiRNA/00new/LVSmiRNA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'BiocGenerics' for requests: 'as.vector', 'unlist' when loading 'LVSmiRNA'
** help
*** installing help indices
converting help for package 'LVSmiRNA'
finding HTML links ... done
MIR-spike-in html
RLM html
boxplot-methods html
estVC html
exprs-methods html
exprs_assign-methods html
featureNames-method html
lvs html
plotRA html
finding level-2 HTML links ... done
preproc-methods html
preproc_assign-methods html
probeNames-methods html
read.mir html
rlmFit html
sampleNames-methods html
summarize html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'BiocGenerics' for requests: 'as.vector', 'unlist' when loading 'LVSmiRNA'
** testing if installed package can be loaded from final location
No methods found in package 'BiocGenerics' for requests: 'as.vector', 'unlist' when loading 'LVSmiRNA'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'LVSmiRNA' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c basic_fns.c -o basic_fns.o
basic_fns.c: In function 'lvs_median':
basic_fns.c:146:7: warning: unused variable 'i' [-Wunused-variable]
int i;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c lvs_rlm.c -o lvs_rlm.o
lvs_rlm.c: In function 'gamma_fit':
lvs_rlm.c:175:30: warning: variable 'converged' set but not used [-Wunused-but-set-variable]
int i,j, rows, cols, iter, converged=0;
^
lvs_rlm.c: In function 'test_gamma_fit':
lvs_rlm.c:286:30: warning: variable 'converged' set but not used [-Wunused-but-set-variable]
int i,j, rows, cols, iter, converged=0;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o LVSmiRNA.dll tmp.def basic_fns.o init.o lvs_rlm.o -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRblas -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/x64
** testing if installed package can be loaded
No methods found in package 'BiocGenerics' for requests: 'as.vector', 'unlist' when loading 'LVSmiRNA'
* MD5 sums
packaged installation of 'LVSmiRNA' as LVSmiRNA_1.33.0.zip
* DONE (LVSmiRNA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'LVSmiRNA' successfully unpacked and MD5 sums checked