Back to Multiple platform build/check report for BioC 3.9
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

BUILD BIN report for HiCcompare on tokay2

This page was generated on 2019-04-09 12:31:48 -0400 (Tue, 09 Apr 2019).

Package 742/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCcompare 1.5.3
John Stansfield
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/HiCcompare
Branch: master
Last Commit: 3f0e938
Last Changed Date: 2019-02-07 12:51:51 -0400 (Thu, 07 Feb 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: HiCcompare
Version: 1.5.3
Command: rm -rf HiCcompare.buildbin-libdir && mkdir HiCcompare.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCcompare.buildbin-libdir HiCcompare_1.5.3.tar.gz
StartedAt: 2019-04-09 08:12:59 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 08:15:13 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 134.1 seconds
RetCode: 0
Status:  OK  
PackageFile: HiCcompare_1.5.3.zip
PackageFileSize: 5.646 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf HiCcompare.buildbin-libdir && mkdir HiCcompare.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCcompare.buildbin-libdir HiCcompare_1.5.3.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'HiCcompare' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'ceiling' 
** help
*** installing help indices
  converting help for package 'HiCcompare'
    finding HTML links ... done
    HMEC.chr10                              html  
    HMEC.chr22                              html  
    HiCcompare-package                      html  
    KRnorm                                  html  
    MA_norm                                 html  
    MD.plot1                                html  
    MD.plot2                                html  
    NHEK.chr10                              html  
    NHEK.chr22                              html  
    SCN                                     html  
    brain_table                             html  
    centromere_locations                    html  
    cooler                                  html  
    cooler2sparse                           html  
    create.hic.table                        html  
    filter_params                           html  
    full2sparse                             html  
    get_CNV                                 html  
    hg19_blacklist                          html  
    hg38_blacklist                          html  
    hic_compare                             html  
    hic_diff                                html  
    hic_loess                               html  
    hic_simulate                            html  
    hicpro2bedpe                            html  
    hmec.IS                                 html  
    make_InteractionSet                     html  
    manhattan_plot                          html  
    nhek.IS                                 html  
    remove_centromere                       html  
    sim.other.methods                       html  
    sim_matrix                              html  
    sparse2full                             html  
    split_centromere                        html  
    total_sum                               html  
    visualize_pvals                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'HiCcompare' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCcompare' as HiCcompare_1.5.3.zip
* DONE (HiCcompare)