Xin Wang
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/HTSanalyzeR |
| Branch: master |
| Last Commit: 2ae206c |
| Last Changed Date: 2019-01-04 13:35:31 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:58:25 -0400 (Tue, 09 Apr 2019).
| Package 759/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HTSanalyzeR 2.35.1 Xin Wang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
| Package: HTSanalyzeR |
| Version: 2.35.1 |
| Command: rm -rf HTSanalyzeR.buildbin-libdir && mkdir HTSanalyzeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HTSanalyzeR.buildbin-libdir HTSanalyzeR_2.35.1.tar.gz |
| StartedAt: 2019-04-09 08:14:32 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 08:15:21 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 49.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: HTSanalyzeR_2.35.1.zip |
| PackageFileSize: 2.982 MiB |
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### Running command:
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### rm -rf HTSanalyzeR.buildbin-libdir && mkdir HTSanalyzeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HTSanalyzeR.buildbin-libdir HTSanalyzeR_2.35.1.tar.gz
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install for i386
* installing *source* package 'HTSanalyzeR' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** help
*** installing help indices
converting help for package 'HTSanalyzeR'
finding HTML links ... done
FDRcollectionGsea html
GOGeneSets html
GSCA-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/GSCA-class.Rd:112: file link 'writeHits' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
GenHTSAHtmlRowUnit html
HTSanalyzeR html
HTSanalyzeR4cellHTS2 html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:8: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:9: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:207: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:218: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:218: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
KeggGeneSets html
NWA-class html
aggregatePvals html
analyze html
analyzeGeneSetCollections html
annotationConvertor html
appendGSTerms html
biogridDataDownload html
celAnnotationConvertor html
cellHTS2OutputStatTests html
changes html
collectionGsea html
data-KcViab html
drosoAnnotationConvertor html
duplicateRemover html
getTopGeneSets html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/getTopGeneSets.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/getTopGeneSets.Rd:27: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/getTopGeneSets.Rd:28: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/getTopGeneSets.Rd:32: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
gseaPlots html
gseaScores html
htmlAttrVectorPaste html
hyperGeoTest html
interactome html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/interactome.Rd:10: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/interactome.Rd:69: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/interactome.Rd:81: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
makeGSEAplots html
makeOverlapTable html
mammalAnnotationConvertor html
multiHyperGeoTest html
networkAnalysis html
networkPlot html
pairwiseGsea html
pairwiseGseaPlot html
pairwisePhenoMannWhit html
paraCheck html
permutationPvalueCollectionGsea html
plotEnrichMap html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotEnrichMap.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotEnrichMap.Rd:13: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotEnrichMap.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotEnrichMap.Rd:26: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotEnrichMap.Rd:30: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
plotGSEA html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotGSEA.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotGSEA.Rd:14: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotGSEA.Rd:24: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotGSEA.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotGSEA.Rd:29: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
plotSubNet html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotSubNet.Rd:10: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotSubNet.Rd:23: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotSubNet.Rd:24: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/plotSubNet.Rd:28: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
preprocess html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/preprocess.Rd:11: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/preprocess.Rd:11: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/preprocess.Rd:15: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/preprocess.Rd:20: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/preprocess.Rd:30: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/preprocess.Rd:31: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/preprocess.Rd:35: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/preprocess.Rd:35: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/preprocess.Rd:112: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/preprocess.Rd:113: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
report html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/report.Rd:11: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/report.Rd:15: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/report.Rd:15: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/report.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/report.Rd:69: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/report.Rd:70: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
reportAll html
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summarize html
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viewEnrichMap html
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Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/viewEnrichMap.Rd:29: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
viewGSEA html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/viewGSEA.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/viewGSEA.Rd:14: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/viewGSEA.Rd:24: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/viewGSEA.Rd:27: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
viewSubNet html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/viewSubNet.Rd:10: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/viewSubNet.Rd:20: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/viewSubNet.Rd:25: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
writeHTSAHtmlHead html
writeHTSAHtmlSummary html
writeHTSAHtmlTab html
writeHTSAHtmlTable html
writeHTSAHtmlTail html
writeReportHTSA html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/writeReportHTSA.Rd:8: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/writeReportHTSA.Rd:8: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/writeReportHTSA.Rd:17: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/writeReportHTSA.Rd:20: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/writeReportHTSA.Rd:56: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHlRrm/R.INSTALL1d7c6f9da59/HTSanalyzeR/man/writeReportHTSA.Rd:57: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HTSanalyzeR' ...
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
* MD5 sums
packaged installation of 'HTSanalyzeR' as HTSanalyzeR_2.35.1.zip
* DONE (HTSanalyzeR)