Package: BrainStars

Version: 1.27.0

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BrainStars.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings BrainStars_1.27.0.tar.gz

StartedAt: 2019-04-09 01:27:58 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 01:29:22 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 83.8 seconds

RetCode: 0

Status:  OK

CheckDir: BrainStars.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BrainStars.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings BrainStars_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/BrainStars.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BrainStars/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BrainStars' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BrainStars' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'RCurl' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getBrainStarsExpression: no visible global function definition for
  'read.csv'
getBrainStars: no visible global function definition for 'getURL'
getBrainStarsExpression: no visible global function definition for
  'new'
getBrainStarsFigure: no visible global function definition for
  'getBinaryURL'
Undefined global functions or variables:
  getBinaryURL getURL new read.csv
Consider adding
  importFrom("methods", "new")
  importFrom("utils", "read.csv")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
getBrainStars       0.39   0.02    5.43
getBrainStarsFigure 0.15   0.01   11.00
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
getBrainStars       0.38   0.03    5.52
getBrainStarsFigure 0.14   0.02   11.05
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.9-bioc/meat/BrainStars.Rcheck/00check.log'
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BrainStars_1.27.0.tar.gz && rm -rf BrainStars.buildbin-libdir && mkdir BrainStars.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BrainStars.buildbin-libdir BrainStars_1.27.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BrainStars_1.27.0.zip && rm BrainStars_1.27.0.tar.gz BrainStars_1.27.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  207k  100  207k    0     0  1990k      0 --:--:-- --:--:-- --:--:-- 2137k

install for i386

* installing *source* package 'BrainStars' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BrainStars'
    finding HTML links ... done
    BrainStars                              html  
    getBrainStars                           html  
    getBrainStarsFigure                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BrainStars' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BrainStars' as BrainStars_1.27.0.zip
* DONE (BrainStars)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BrainStars' successfully unpacked and MD5 sums checked