Wolfgang Huber
| Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019) |
| URL: https://git.bioconductor.org/packages/MSBdata |
| Branch: RELEASE_3_8 |
| Last Commit: 3a4a328 |
| Last Changed Date: 2018-10-30 11:36:23 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 experimental data |
This page was generated on 2019-04-16 15:26:10 -0400 (Tue, 16 Apr 2019).
| Package 221/360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Wolfgang Huber
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |
| Package: MSBdata |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:MSBdata.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings MSBdata_1.0.0.tar.gz |
| StartedAt: 2019-04-16 13:55:10 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 13:55:17 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 7.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: MSBdata.Rcheck |
| Warnings: 4 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:MSBdata.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings MSBdata_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/MSBdata.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MSBdata/DESCRIPTION’ ... OK
* this is package ‘MSBdata’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MSBdata’ can be installed ... WARNING
Found the following significant warnings:
Warning: Package 'MSBdata' is deprecated and will be removed from Bioconductor
See ‘/home/biocbuild/bbs-3.8-data-experiment/meat/MSBdata.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
installed size is 7.4Mb
sub-directories of 1Mb or more:
extdata 3.5Mb
images 3.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
‘brcalymphnode’ ‘e100’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Warning: package needs dependence on R (>= 2.10)
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
‘MSBdata.Rnw’
Files named as vignettes but with no recognized vignette engine:
‘vignettes/MSBdata.Rnw’
(Is a VignetteBuilder field missing?)
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 4 WARNINGs, 2 NOTEs
See
‘/home/biocbuild/bbs-3.8-data-experiment/meat/MSBdata.Rcheck/00check.log’
for details.
MSBdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL MSBdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘MSBdata’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help No man pages found in package ‘MSBdata’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Warning: Package 'MSBdata' is deprecated and will be removed from Bioconductor version 3.8. The package has been renamed MSMB. * DONE (MSBdata)