Back to Multiple platform build/check report for BioC 3.8 experimental data |
This page was generated on 2019-04-16 15:26:20 -0400 (Tue, 16 Apr 2019).
Package 93/360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
DuoClustering2018 1.0.0 Angelo Duò
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] |
Package: DuoClustering2018 |
Version: 1.0.0 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:DuoClustering2018.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings DuoClustering2018_1.0.0.tar.gz |
StartedAt: 2019-04-16 13:38:47 -0400 (Tue, 16 Apr 2019) |
EndedAt: 2019-04-16 13:42:23 -0400 (Tue, 16 Apr 2019) |
EllapsedTime: 215.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DuoClustering2018.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:DuoClustering2018.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings DuoClustering2018_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/DuoClustering2018.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DuoClustering2018/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DuoClustering2018’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DuoClustering2018’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ari_df: no visible binding for global variable ‘cell’ plot_entropy: no visible binding for global variable ‘dataset’ plot_entropy: no visible binding for global variable ‘method’ plot_entropy: no visible binding for global variable ‘run’ plot_entropy: no visible binding for global variable ‘k’ plot_entropy: no visible binding for global variable ‘cluster’ plot_entropy: no visible binding for global variable ‘trueclass’ plot_entropy: no visible binding for global variable ‘s’ plot_entropy: no visible binding for global variable ‘s.true’ plot_entropy: no visible binding for global variable ‘est_k’ plot_entropy: no visible binding for global variable ‘sce’ plot_entropy: no visible binding for global variable ‘filtering’ plot_entropy: no visible binding for global variable ‘truenclust’ plot_entropy: no visible binding for global variable ‘entropy’ plot_entropy: no visible binding for global variable ‘ARI’ plot_entropy: no visible binding for global variable ‘s.norm’ plot_entropy: no visible binding for global variable ‘s.true.norm’ plot_entropy: no visible binding for global variable ‘ds’ plot_entropy: no visible binding for global variable ‘ds.norm’ plot_k_diff: no visible binding for global variable ‘dataset’ plot_k_diff: no visible binding for global variable ‘method’ plot_k_diff: no visible binding for global variable ‘run’ plot_k_diff: no visible binding for global variable ‘k’ plot_k_diff: no visible binding for global variable ‘cluster’ plot_k_diff: no visible binding for global variable ‘trueclass’ plot_k_diff: no visible binding for global variable ‘est_k’ plot_k_diff: no visible binding for global variable ‘elapsed’ plot_k_diff: no visible binding for global variable ‘sce’ plot_k_diff: no visible binding for global variable ‘filtering’ plot_k_diff: no visible binding for global variable ‘truenclust’ plot_k_diff: no visible binding for global variable ‘ARI’ plot_k_diff: no visible binding for global variable ‘medARI’ plot_k_diff: no visible binding for global variable ‘k_diff’ plot_k_diff: no visible binding for global variable ‘estnclust’ plot_performance: no visible binding for global variable ‘dataset’ plot_performance: no visible binding for global variable ‘method’ plot_performance: no visible binding for global variable ‘run’ plot_performance: no visible binding for global variable ‘k’ plot_performance: no visible binding for global variable ‘cluster’ plot_performance: no visible binding for global variable ‘trueclass’ plot_performance: no visible binding for global variable ‘est_k’ plot_performance: no visible binding for global variable ‘elapsed’ plot_performance: no visible binding for global variable ‘sce’ plot_performance: no visible binding for global variable ‘filtering’ plot_performance: no visible binding for global variable ‘ARI’ plot_performance: no visible binding for global variable ‘truenclust’ plot_performance: no visible binding for global variable ‘medianARI’ plot_performance: no visible binding for global variable ‘estnclust’ plot_stability: no visible binding for global variable ‘dataset’ plot_stability: no visible binding for global variable ‘method’ plot_stability: no visible binding for global variable ‘k’ plot_stability: no visible binding for global variable ‘data.wide’ plot_stability: no visible binding for global variable ‘stability’ plot_stability: no visible binding for global variable ‘truenclust’ plot_stability: no visible binding for global variable ‘sce’ plot_stability: no visible binding for global variable ‘filtering’ plot_stability: no visible binding for global variable ‘ari.stab’ plot_stability: no visible binding for global variable ‘median.stability’ plot_timing: no visible binding for global variable ‘dataset’ plot_timing: no visible binding for global variable ‘method’ plot_timing: no visible binding for global variable ‘run’ plot_timing: no visible binding for global variable ‘k’ plot_timing: no visible binding for global variable ‘cluster’ plot_timing: no visible binding for global variable ‘trueclass’ plot_timing: no visible binding for global variable ‘est_k’ plot_timing: no visible binding for global variable ‘elapsed’ plot_timing: no visible binding for global variable ‘sce’ plot_timing: no visible binding for global variable ‘filtering’ plot_timing: no visible binding for global variable ‘truenclust’ plot_timing: no visible binding for global variable ‘median.elapsed’ plot_timing: no visible binding for global variable ‘med.t’ plot_timing: no visible binding for global variable ‘norm.time’ plot_timing: no visible binding for global variable ‘medianelapsed’ Undefined global functions or variables: ARI ari.stab cell cluster data.wide dataset ds ds.norm elapsed entropy est_k estnclust filtering k k_diff med.t medARI median.elapsed median.stability medianARI medianelapsed method norm.time run s s.norm s.true s.true.norm sce stability trueclass truenclust * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed sce_full_SimKumar 11.400 0.652 14.919 sce_full_Zhengmix 10.928 0.908 12.004 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.8-data-experiment/meat/DuoClustering2018.Rcheck/00check.log’ for details.
DuoClustering2018.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL DuoClustering2018 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘DuoClustering2018’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded snapshotDate(): 2018-10-30 * DONE (DuoClustering2018)
DuoClustering2018.Rcheck/DuoClustering2018-Ex.timings
name | user | system | elapsed | |
clustering_summary_v1 | 1.952 | 0.184 | 2.407 | |
clustering_summary_v2 | 1.712 | 0.176 | 1.966 | |
duo_clustering_all_parameter_settings_v1 | 0.352 | 0.024 | 0.474 | |
duo_clustering_all_parameter_settings_v2 | 0.432 | 0.028 | 0.544 | |
plot_entropy | 3.000 | 0.028 | 3.109 | |
plot_k_diff | 1.852 | 0.012 | 2.009 | |
plot_performance | 1.632 | 0.012 | 1.741 | |
plot_stability | 3.112 | 0.012 | 3.224 | |
plot_timing | 2.116 | 0.052 | 2.278 | |
sce_full_Koh | 4.296 | 0.176 | 4.784 | |
sce_full_Kumar | 0.672 | 0.036 | 0.815 | |
sce_full_SimKumar | 11.400 | 0.652 | 14.919 | |
sce_full_Trapnell | 2.256 | 0.180 | 2.809 | |
sce_full_Zhengmix | 10.928 | 0.908 | 12.004 | |