Rafael A. Irizarry
| Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019) |
| URL: https://git.bioconductor.org/packages/SpikeInSubset |
| Branch: RELEASE_3_8 |
| Last Commit: ced9561 |
| Last Changed Date: 2018-10-30 11:36:21 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 experimental data |
This page was generated on 2019-04-16 15:26:00 -0400 (Tue, 16 Apr 2019).
| Package 322/360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SpikeInSubset 1.22.0 Rafael A. Irizarry
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |
| Package: SpikeInSubset |
| Version: 1.22.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:SpikeInSubset.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings SpikeInSubset_1.22.0.tar.gz |
| StartedAt: 2019-04-16 14:07:06 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 14:08:41 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 95.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: SpikeInSubset.Rcheck |
| Warnings: 3 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:SpikeInSubset.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings SpikeInSubset_1.22.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/SpikeInSubset.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SpikeInSubset/DESCRIPTION’ ... OK
* this is package ‘SpikeInSubset’ version ‘1.22.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SpikeInSubset’ can be installed ... WARNING
Found the following significant warnings:
Warning: /home/biocbuild/bbs-3.8-data-experiment/meat/SpikeInSubset/man/xhyb.Rd: docType ‘instance’ is unrecognized
See ‘/home/biocbuild/bbs-3.8-data-experiment/meat/SpikeInSubset.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
installed size is 20.5Mb
sub-directories of 1Mb or more:
data 20.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
‘Biobase’ ‘affy’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
prepare_Rd: xhyb.Rd: docType ‘instance’ is unrecognized
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
hgu133a.spikein.xhyb.rda 12Kb 2Kb gzip
mas133.rda 2.2Mb 986Kb xz
mas95.rda 1.3Mb 572Kb xz
rma133.rda 2.2Mb 893Kb xz
rma95.rda 1.3Mb 522Kb xz
spikein133.rda 7.3Mb 4.4Mb xz
spikein95.rda 6.1Mb 3.6Mb xz
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.8-data-experiment/meat/SpikeInSubset.Rcheck/00check.log’
for details.
SpikeInSubset.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL SpikeInSubset ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘SpikeInSubset’ ... ** R ** data ** byte-compile and prepare package for lazy loading ** help Warning: /home/biocbuild/bbs-3.8-data-experiment/meat/SpikeInSubset/man/xhyb.Rd: docType ‘instance’ is unrecognized *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (SpikeInSubset)