Thomas Girke
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/systemPipeR |
| Branch: RELEASE_3_8 |
| Last Commit: 6f1a478 |
| Last Changed Date: 2019-01-04 13:07:22 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:24:19 -0400 (Sat, 13 Apr 2019).
| Package 1541/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| systemPipeR 1.16.1 Thomas Girke
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | NA | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: systemPipeR |
| Version: 1.16.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/systemPipeR_1.16.1.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.16.1.zip && rm systemPipeR_1.16.1.tar.gz systemPipeR_1.16.1.zip |
| StartedAt: 2019-04-12 20:03:47 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:05:40 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 113.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/systemPipeR_1.16.1.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.16.1.zip && rm systemPipeR_1.16.1.tar.gz systemPipeR_1.16.1.zip
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install for i386
* installing *source* package 'systemPipeR' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'systemPipeR'
finding HTML links ... done
GOHyperGAll html
INTERSECTset-class html
SYSargs-class html
VENNset-class html
alignStats html
catDB-class html
catmap html
clusterRun html
countRangeset html
featureCoverage html
featuretypeCounts html
filterDEGs html
filterVars html
genFeatures html
getQsubargs html
mergeBamByFactor html
moduleload html
olBarplot html
overLapper html
plotfeatureCoverage html
plotfeaturetypeCounts html
predORF html
preprocessReads html
qsubRun html
readComp html
returnRPKM html
runCommandline html
runDiff html
run_DESeq2 html
run_edgeR html
scaleRanges html
seeFastq html
symLink2bam html
sysargs html
systemArgs html
variantReport html
vennPlot html
writeTargetsRef html
writeTargetsout html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'systemPipeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'systemPipeR' as systemPipeR_1.16.1.zip
* DONE (systemPipeR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'systemPipeR' successfully unpacked and MD5 sums checked
In R CMD INSTALL