Package: spliceR

Version: 1.21.1

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/spliceR_1.21.1.tar.gz && rm -rf spliceR.buildbin-libdir && mkdir spliceR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spliceR.buildbin-libdir spliceR_1.21.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL spliceR_1.21.1.zip && rm spliceR_1.21.1.tar.gz spliceR_1.21.1.zip

StartedAt: 2018-04-29 20:23:24 -0400 (Sun, 29 Apr 2018)

EndedAt: 2018-04-29 20:24:38 -0400 (Sun, 29 Apr 2018)

EllapsedTime: 73.8 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/spliceR_1.21.1.tar.gz && rm -rf spliceR.buildbin-libdir && mkdir spliceR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spliceR.buildbin-libdir spliceR_1.21.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL spliceR_1.21.1.zip && rm spliceR_1.21.1.tar.gz spliceR_1.21.1.zip
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install for i386

* installing *source* package 'spliceR' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c utils.c -o utils.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o spliceR.dll tmp.def utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/spliceR.buildbin-libdir/spliceR/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'spliceR'
    finding HTML links ... done
    CDSSet                                  html  
    SpliceRList                             html  
    annotatePTC.R                           html  
    conditions                              html  
    dim                                     html  
    generateGTF                             html  
    getCDS                                  html  
    preSpliceRFilter                        html  
    prepareCuff                             html  
    prepareCuffExample                      html  
    spliceR                                 html  
    spliceRPlot                             html  
    tools                                   html  
    topIsoShift                             html  
    totalNumberOfAS                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: Package 'spliceR' is deprecated and will be removed from Bioconductor
  version 3.7 . Functionalities moved to IsoformSwitchAnalyzeR
In R CMD INSTALL

install for x64

* installing *source* package 'spliceR' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c utils.c -o utils.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o spliceR.dll tmp.def utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/spliceR.buildbin-libdir/spliceR/libs/x64
** testing if installed package can be loaded
Warning: Package 'spliceR' is deprecated and will be removed from Bioconductor
  version 3.7 . Functionalities moved to IsoformSwitchAnalyzeR
* MD5 sums
packaged installation of 'spliceR' as spliceR_1.21.1.zip
* DONE (spliceR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'spliceR' successfully unpacked and MD5 sums checked
In R CMD INSTALL