Martino Barenco
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/rHVDM |
| Branch: RELEASE_3_8 |
| Last Commit: 99653d9 |
| Last Changed Date: 2018-10-30 11:41:43 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:20:10 -0400 (Sat, 13 Apr 2019).
| Package 1309/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| rHVDM 1.48.0 Martino Barenco
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: rHVDM |
| Version: 1.48.0 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rHVDM.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings rHVDM_1.48.0.tar.gz |
| StartedAt: 2019-04-13 05:03:14 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 05:06:06 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 172.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: rHVDM.Rcheck |
| Warnings: 1 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rHVDM.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings rHVDM_1.48.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/rHVDM.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rHVDM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rHVDM' version '1.48.0'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rHVDM' can be installed ... WARNING
Found the following significant warnings:
Note: break used in wrong context: no loop is visible
See 'C:/Users/biocbuild/bbs-3.8-bioc/meat/rHVDM.Rcheck/00install.out' for details.
Information on the location(s) of code generating the 'Note's can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to 'yes'.
* checking installed package size ... NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 5.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.bin.ut: no visible global function definition for 'quantile'
.binb.ut: no visible global function definition for 'quantile'
.geneoutput: no visible global function definition for 'png'
.geneoutput: no visible global function definition for 'par'
.geneoutput: no visible global function definition for 'plot'
.geneoutput: no visible global function definition for 'arrows'
.geneoutput: no visible global function definition for 'lines'
.geneoutput: no visible global function definition for 'dev.off'
.greport: no visible global function definition for 'runif'
.parameteroutput: no visible global function definition for 'png'
.parameteroutput: no visible global function definition for 'par'
.parameteroutput: no visible global function definition for 'arrows'
.parameteroutput: no visible global function definition for 'dev.off'
.parameteroutput: no visible global function definition for 'plot'
.parameteroutput: no visible global function definition for 'lines'
.parameteroutput: no visible global function definition for 'cov2cor'
.parameteroutputg: no visible global function definition for 'png'
.parameteroutputg: no visible global function definition for 'par'
.parameteroutputg: no visible global function definition for 'arrows'
.parameteroutputg: no visible global function definition for 'dev.off'
.parameteroutputg: no visible global function definition for 'cov2cor'
.parameteroutputg.nl: no visible global function definition for 'png'
.parameteroutputg.nl: no visible global function definition for 'par'
.parameteroutputg.nl: no visible global function definition for
'arrows'
.parameteroutputg.nl: no visible global function definition for
'dev.off'
.parameteroutputg.nl: no visible global function definition for
'cov2cor'
.scoreoutput: no visible global function definition for 'qchisq'
.scoreoutput: no visible global function definition for 'png'
.scoreoutput: no visible global function definition for 'par'
.scoreoutput: no visible global function definition for 'plot'
.scoreoutput: no visible global function definition for 'dchisq'
.scoreoutput: no visible global function definition for 'points'
.scoreoutput: no visible global function definition for 'qnorm'
.scoreoutput: no visible global function definition for 'lines'
.scoreoutput: no visible global function definition for 'dev.off'
.scorout: no visible global function definition for 'pchisq'
.screenoutput: no visible global function definition for 'png'
.screenoutput: no visible global function definition for 'plot'
.screenoutput: no visible global function definition for 'lines'
.screenoutput: no visible global function definition for 'dev.off'
.sreport: no visible global function definition for 'runif'
.treport: no visible global function definition for 'runif'
Undefined global functions or variables:
arrows cov2cor dchisq dev.off lines par pchisq plot png points qchisq
qnorm quantile runif
Consider adding
importFrom("grDevices", "dev.off", "png")
importFrom("graphics", "arrows", "lines", "par", "plot", "points")
importFrom("stats", "cov2cor", "dchisq", "pchisq", "qchisq", "qnorm",
"quantile", "runif")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
training.nl 9.19 0.06 9.25
screening.nl 8.77 0.01 8.78
fitgene.nl 7.83 0.08 7.91
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
screening.nl 9.39 0.01 9.40
fitgene.nl 9.23 0.05 9.28
training.nl 8.50 0.01 8.51
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/rHVDM.Rcheck/00check.log'
for details.
rHVDM.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/rHVDM_1.48.0.tar.gz && rm -rf rHVDM.buildbin-libdir && mkdir rHVDM.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rHVDM.buildbin-libdir rHVDM_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL rHVDM_1.48.0.zip && rm rHVDM_1.48.0.tar.gz rHVDM_1.48.0.zip
###
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install for i386
* installing *source* package 'rHVDM' ...
** R
** data
** byte-compile and prepare package for lazy loading
Note: break used in wrong context: no loop is visible
** help
*** installing help indices
converting help for package 'rHVDM'
finding HTML links ... done
HVDMcheck html
HVDMreport html
estimerrors html
fitgene html
fitgene.lin html
fitgene.nl html
fiveGyMAS5 html
genestoscreen html
leastnoisychips html
p53traingenes html
rHVDMplattforms html
screening html
screening.nl html
training html
training.nl html
twodosesMAS5 html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'rHVDM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rHVDM' as rHVDM_1.48.0.zip
* DONE (rHVDM)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'rHVDM' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
rHVDM.Rcheck/examples_i386/rHVDM-Ex.timings
|
rHVDM.Rcheck/examples_x64/rHVDM-Ex.timings
|