Vince Buffalo
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/qrqc |
| Branch: RELEASE_3_8 |
| Last Commit: fb80b84 |
| Last Changed Date: 2018-10-30 11:41:47 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:21:36 -0400 (Sat, 13 Apr 2019).
| Package 1226/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| qrqc 1.36.0 Vince Buffalo
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: qrqc |
| Version: 1.36.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/qrqc_1.36.0.tar.gz && rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qrqc.buildbin-libdir qrqc_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL qrqc_1.36.0.zip && rm qrqc_1.36.0.tar.gz qrqc_1.36.0.zip |
| StartedAt: 2019-04-12 20:14:25 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:18:02 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 216.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/qrqc_1.36.0.tar.gz && rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qrqc.buildbin-libdir qrqc_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL qrqc_1.36.0.zip && rm qrqc_1.36.0.tar.gz qrqc_1.36.0.zip
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install for i386
* installing *source* package 'qrqc' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_init_io.c -o R_init_io.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c io.c -o io.o
In file included from io.c:11:0:
C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/include/samtools/kseq.h:158:13: warning: 'kseq_destroy' defined but not used [-Wunused-function]
SCOPE void kseq_destroy(kseq_t *ks) \
^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/include/samtools/kseq.h:223:2: note: in expansion of macro '__KSEQ_BASIC'
__KSEQ_BASIC(SCOPE, type_t) \
^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/include/samtools/kseq.h:226:35: note: in expansion of macro 'KSEQ_INIT2'
#define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
^
io.c:28:1: note: in expansion of macro 'KSEQ_INIT'
KSEQ_INIT(FILE_TYPE*, gzreadclone)
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/usrlib/i386/libbam.a C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/usrlib/i386/libbam.a C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/usrlib/i386/libbcf.a C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/usrlib/i386/libtabix.a -lws2_32 -pthread -LC:/Users/biocbuild/bbs-3.8-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'qrqc'
finding HTML links ... done
FASTASummary-class html
FASTQSummary-class html
SequenceSummary-class html
basePlot-methods html
calcKL html
gcPlot-methods html
geom_qlinerange html
getBase-methods html
getBaseProp-methods html
getGC-methods html
getKmer-methods html
getMCQual-methods html
getQual-methods html
getSeqlen-methods html
kmerEntropyPlot html
kmerKLPlot html
list2df html
makeReport html
plotBases html
plotGC html
plotQuals html
plotSeqLengths html
qualPlot-methods html
readSeqFile html
scale_color_dna html
scale_color_iupac html
seqlenPlot-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'qrqc' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_init_io.c -o R_init_io.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c io.c -o io.o
In file included from io.c:11:0:
C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/include/samtools/kseq.h:158:13: warning: 'kseq_destroy' defined but not used [-Wunused-function]
SCOPE void kseq_destroy(kseq_t *ks) \
^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/include/samtools/kseq.h:223:2: note: in expansion of macro '__KSEQ_BASIC'
__KSEQ_BASIC(SCOPE, type_t) \
^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/include/samtools/kseq.h:226:35: note: in expansion of macro 'KSEQ_INIT2'
#define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
^
io.c:28:1: note: in expansion of macro 'KSEQ_INIT'
KSEQ_INIT(FILE_TYPE*, gzreadclone)
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/usrlib/x64/libbam.a C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/usrlib/x64/libbam.a C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/usrlib/x64/libbcf.a C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rsamtools/usrlib/x64/libtabix.a -lws2_32 -pthread -LC:/Users/biocbuild/bbs-3.8-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qrqc' as qrqc_1.36.0.zip
* DONE (qrqc)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'qrqc' successfully unpacked and MD5 sums checked
In R CMD INSTALL