Package: pcaMethods

Version: 1.74.0

Command: rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pcaMethods_1.74.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R pcaMethods.buildbin-libdir

StartedAt: 2019-04-16 04:30:53 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 04:31:35 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 42.6 seconds

RetCode: 0

Status:  OK

PackageFile: pcaMethods_1.74.0.tgz

PackageFileSize: 1.028 MiB

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### Running command:
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###   rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pcaMethods_1.74.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R pcaMethods.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=pcaMethods.buildbin-libdir pcaMethods_1.74.0.tar.gz'
>>>>>>> 

* installing *source* package ‘pcaMethods’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c nipals.cpp -o nipals.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pcaMethods.so RcppExports.o nipals.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/pcaMethods.buildbin-libdir/pcaMethods/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘loadings’ in package ‘pcaMethods’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (pcaMethods)


>>>>>>> 
>>>>>>> FIXING LINKS FOR pcaMethods.buildbin-libdir/pcaMethods/libs//pcaMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs//pcaMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs//pcaMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs//pcaMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs//pcaMethods.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs//pcaMethods.so"