Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-13 11:20:50 -0400 (Sat, 13 Apr 2019).
Package 1119/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
parody 1.40.0 VJ Carey
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: parody |
Version: 1.40.0 |
Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:parody.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings parody_1.40.0.tar.gz |
StartedAt: 2019-04-13 04:23:40 -0400 (Sat, 13 Apr 2019) |
EndedAt: 2019-04-13 04:25:07 -0400 (Sat, 13 Apr 2019) |
EllapsedTime: 86.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: parody.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:parody.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings parody_1.40.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/parody.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'parody/DESCRIPTION' ... OK * this is package 'parody' version '1.40.0' * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'parody' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'methods' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ddcovGen : <anonymous>: warning in matrix(x[i, ], nc = 1): partial argument match of 'nc' to 'ncol' ddcovGen : <anonymous>: warning in matrix((N * mx - om)/(N - 1), nc = 1): partial argument match of 'nc' to 'ncol' C.unstr: no visible global function definition for 'var' C.unstr: no visible global function definition for 'mahalanobis' MLvarcov: no visible global function definition for 'var' al: no visible global function definition for 'plogis' d1S: no visible global function definition for 'var' ddcovGen: no visible global function definition for 'var' hamp.scale.4: no visible global function definition for 'qnorm' hampor : Mad: no visible global function definition for 'median' hampor: no visible global function definition for 'median' lams.unstr: no visible global function definition for 'qbeta' lamtab: no visible global function definition for 'qt' mlvar: no visible global function definition for 'var' shorth: no visible global function definition for 'qnorm' skesd: no visible global function definition for 'median' skesd: no visible global function definition for 'var' skesd.old: no visible global function definition for 'var' Undefined global functions or variables: mahalanobis median plogis qbeta qnorm qt var Consider adding importFrom("stats", "mahalanobis", "median", "plogis", "qbeta", "qnorm", "qt", "var") to your NAMESPACE file. * checking Rd files ... NOTE prepare_Rd: mv.calout.detect.Rd:40: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See 'C:/Users/biocbuild/bbs-3.8-bioc/meat/parody.Rcheck/00check.log' for details.
parody.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/parody_1.40.0.tar.gz && rm -rf parody.buildbin-libdir && mkdir parody.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=parody.buildbin-libdir parody_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL parody_1.40.0.zip && rm parody_1.40.0.tar.gz parody_1.40.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 13606 100 13606 0 0 330k 0 --:--:-- --:--:-- --:--:-- 369k install for i386 * installing *source* package 'parody' ... ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'parody' finding HTML links ... done box.scale html bushfire html calout.detect html mv.calout.detect html shorth html tcost html tukeyor html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'parody' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'parody' as parody_1.40.0.zip * DONE (parody) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library' package 'parody' successfully unpacked and MD5 sums checked In R CMD INSTALL
parody.Rcheck/examples_i386/parody-Ex.timings
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parody.Rcheck/examples_x64/parody-Ex.timings
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