Mike Jiang
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/openCyto |
| Branch: RELEASE_3_8 |
| Last Commit: cf01d58 |
| Last Changed Date: 2019-01-22 16:33:10 -0400 (Tue, 22 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:23:18 -0400 (Sat, 13 Apr 2019).
| Package 1094/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| openCyto 1.20.2 Mike Jiang
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: openCyto |
| Version: 1.20.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/openCyto_1.20.2.tar.gz && rm -rf openCyto.buildbin-libdir && mkdir openCyto.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=openCyto.buildbin-libdir openCyto_1.20.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL openCyto_1.20.2.zip && rm openCyto_1.20.2.tar.gz openCyto_1.20.2.zip |
| StartedAt: 2019-04-12 20:07:56 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:09:09 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 73.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/openCyto_1.20.2.tar.gz && rm -rf openCyto.buildbin-libdir && mkdir openCyto.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=openCyto.buildbin-libdir openCyto_1.20.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL openCyto_1.20.2.zip && rm openCyto_1.20.2.tar.gz openCyto_1.20.2.zip
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install for i386
* installing *source* package 'openCyto' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c misc.cpp -o misc.o
misc.cpp: In function 'Rcpp::NumericMatrix collapseData(Rcpp::List, Rcpp::StringVector)':
misc.cpp:10:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned i = 0; i < mat_list.size(); i++){
^
misc.cpp:21:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned ind = 0; ind < mat_list.size(); ind++){
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c unlockNamespace.c -o unlockNamespace.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o openCyto.dll tmp.def RcppExports.o misc.o unlockNamespace.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/openCyto.buildbin-libdir/openCyto/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'openCyto'
finding HTML links ... done
add html
add_pop html
as.data.table.gatingTemplate html
boolMethod-class html
dims-gtMethod-method html
dummyMethod-class html
fcEllipsoidGate-class html
fcEllipsoidGate html
fcFilter-class html
fcFilterList-class html
fcFilterList html
fcPolygonGate-class html
fcPolygonGate html
fcRectangleGate-class html
fcRectangleGate html
fcTree-class html
fcTree html
flowClust1d html
finding level-2 HTML links ... done
flowClust2d html
gate_mindensity html
gate_mindensity2 html
gate_quad_sequential html
gate_quad_tmix html
gate_quantile html
gate_tail html
gating-gtMethod-GatingSet-method html
gating-methods html
gatingTemplate-class html
getChildren-gatingTemplate-character-method
html
getGate-fcTree-character-method html
getGate-gatingTemplate-character-method
html
getNodes-fcTree-method html
getNodes html
getParent-gatingTemplate-character-method
html
groupBy-gtMethod-method html
gtMethod-class html
gtPopulation-class html
gtSubsets-class html
isCollapse-gtMethod-method html
isPolyfunctional html
listgtMethods html
names-gtMethod-method html
names-gtPopulation-method html
ocRectRefGate-class html
ocRectRefGate html
ocRectangleGate-class html
openCyto html
openCyto.options html
parameters-gtMethod-method html
plot-fcFilterList-ANY-method html
plot-fcTree-character-method html
plot-gatingTemplate-missing-method html
polyFunctions-class html
posteriors-fcFilter-ANY-method html
ppMethod-class html
ppMethod-gatingTemplate-character-method
html
preprocessing-ppMethod-GatingSet-method
html
prior_flowClust html
prior_flowClust1d html
prior_kmeans html
priors-fcFilter-ANY-method html
refGate-class html
registerPlugins html
show-boolMethod-method html
show-fcFilter-method html
show-gatingTemplate-method html
show-gtMethod-method html
templateGen html
toggle.helperGates html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'openCyto' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c misc.cpp -o misc.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c unlockNamespace.c -o unlockNamespace.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o openCyto.dll tmp.def RcppExports.o misc.o unlockNamespace.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/openCyto.buildbin-libdir/openCyto/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'openCyto' as openCyto_1.20.2.zip
* DONE (openCyto)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'openCyto' successfully unpacked and MD5 sums checked
In R CMD INSTALL