Package: nuCpos

Version: 1.0.1

Command: rm -rf nuCpos.buildbin-libdir && mkdir nuCpos.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh nuCpos_1.0.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R nuCpos.buildbin-libdir

StartedAt: 2019-04-16 04:27:48 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 04:28:24 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 35.1 seconds

RetCode: 0

Status:  OK

PackageFile: nuCpos_1.0.1.tgz

PackageFileSize: 1.229 MiB

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### Running command:
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###   rm -rf nuCpos.buildbin-libdir && mkdir nuCpos.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh nuCpos_1.0.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R nuCpos.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=nuCpos.buildbin-libdir nuCpos_1.0.1.tar.gz'
>>>>>>> 

* installing *source* package ‘nuCpos’ ...
** libs
gfortran  -fPIC -Wall -g -O2  -c  HBA_3.f90 -o HBA_3.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_nuCpos.c -o R_init_nuCpos.o
gfortran  -fPIC -Wall -g -O2  -c  localHBA_3.f90 -o localHBA_3.o
gfortran  -fPIC -Wall -g -O2  -c  nuCpos2_1.f90 -o nuCpos2_1.o
gfortran  -fPIC -Wall -g -O2  -c  nuCpos2_2.f90 -o nuCpos2_2.o
gfortran  -fPIC -Wall -g -O2  -c  nuCpos_1.f90 -o nuCpos_1.o
gfortran  -fPIC -Wall -g -O2  -c  nuCpos_2.f90 -o nuCpos_2.o
gfortran -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o nuCpos.so HBA_3.o R_init_nuCpos.o localHBA_3.o nuCpos2_1.o nuCpos2_2.o nuCpos_1.o nuCpos_2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/nuCpos.buildbin-libdir/nuCpos/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (nuCpos)


>>>>>>> 
>>>>>>> FIXING LINKS FOR nuCpos.buildbin-libdir/nuCpos/libs//nuCpos.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "nuCpos.buildbin-libdir/nuCpos/libs//nuCpos.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "nuCpos.buildbin-libdir/nuCpos/libs//nuCpos.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "nuCpos.buildbin-libdir/nuCpos/libs//nuCpos.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "nuCpos.buildbin-libdir/nuCpos/libs//nuCpos.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "nuCpos.buildbin-libdir/nuCpos/libs//nuCpos.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "nuCpos.buildbin-libdir/nuCpos/libs//nuCpos.so"
install_name_tool -change "/usr/local/gfortran/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "nuCpos.buildbin-libdir/nuCpos/libs//nuCpos.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "nuCpos.buildbin-libdir/nuCpos/libs//nuCpos.so"