Package: multiscan

Version: 1.42.0

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:multiscan.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings multiscan_1.42.0.tar.gz

StartedAt: 2019-04-16 01:40:56 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 01:41:25 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 29.9 seconds

RetCode: 0

Status:  OK

CheckDir: multiscan.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:multiscan.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings multiscan_1.42.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/multiscan.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘multiscan/DESCRIPTION’ ... OK
* this is package ‘multiscan’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘multiscan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘multiscan/R/zzz.R’:
  .onAttach calls:
    cat(paste("*** Loaded multiscan Version", packageDescription("multiscan")$Version),     "*** \n")
    cat("Type 'vignette(\"multiscan\")' to view the package vignette.\n")

Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in '?.onAttach'.

multiscan: no visible global function definition for ‘na.omit’
multiscan: no visible global function definition for ‘na.fail’
multiscan: no visible binding for global variable ‘median’
plot.multiscan: no visible global function definition for ‘par’
plot.multiscan: no visible global function definition for ‘plot’
plot.multiscan: no visible global function definition for ‘points’
plot.multiscan: no visible global function definition for ‘lines’
plot.multiscan: no visible global function definition for ‘legend’
plot.multiscan: no visible global function definition for
  ‘dev.interactive’
plot.multiscan: no visible global function definition for ‘abline’
Undefined global functions or variables:
  abline dev.interactive legend lines median na.fail na.omit par plot
  points
Consider adding
  importFrom("grDevices", "dev.interactive")
  importFrom("graphics", "abline", "legend", "lines", "par", "plot",
             "points")
  importFrom("stats", "median", "na.fail", "na.omit")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.8-bioc/meat/multiscan.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL multiscan
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘multiscan’ ...
** libs
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c multiscan.c -o multiscan.o
gcc -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o multiscan.so multiscan.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/multiscan/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** Loaded multiscan Version 1.42.0 *** 
Type 'vignette("multiscan")' to view the package vignette.
* DONE (multiscan)

name	user	system	elapsed
multiscan	4.032	0.012	4.047
plot.multiscan	2.040	0.012	2.057