Thuc Duy Le
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/miRLAB |
| Branch: RELEASE_3_8 |
| Last Commit: 662fedd |
| Last Changed Date: 2018-10-30 11:41:58 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:58:50 -0400 (Tue, 16 Apr 2019).
| Package 969/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| miRLAB 1.12.0 Thuc Duy Le
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | ERROR | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: miRLAB |
| Version: 1.12.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:miRLAB.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings miRLAB_1.12.0.tar.gz |
| StartedAt: 2019-04-16 01:19:53 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 01:28:32 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 519.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: miRLAB.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:miRLAB.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings miRLAB_1.12.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/miRLAB.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRLAB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘miRLAB’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRLAB’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getData 358.231 422.878 159.143
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
miRLAB.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL miRLAB ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘miRLAB’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (miRLAB)
miRLAB.Rcheck/tests/runTests.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("miRLAB")
Loading required package: amap
RUNIT TEST PROTOCOL -- Tue Apr 16 01:28:27 2019
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
miRLAB RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
16.391 0.880 17.396
miRLAB.Rcheck/miRLAB-Ex.timings
| name | user | system | elapsed | |
| Borda | 0.134 | 0.003 | 0.140 | |
| BordaTopk | 0.057 | 0.002 | 0.059 | |
| Dcov | 0.037 | 0.008 | 0.047 | |
| Elastic | 0.061 | 0.001 | 0.062 | |
| Extopk | 0.012 | 0.001 | 0.012 | |
| GOBPenrichment | 0.001 | 0.000 | 0.000 | |
| Hoeffding | 0.034 | 0.000 | 0.037 | |
| IDA | 0.058 | 0.000 | 0.059 | |
| ImputeNormData | 0.038 | 0.001 | 0.039 | |
| KEGGenrichment | 0 | 0 | 0 | |
| Kendall | 0.011 | 0.000 | 0.011 | |
| Lasso | 0.040 | 0.001 | 0.041 | |
| MI | 0.077 | 0.001 | 0.078 | |
| Pearson | 0.006 | 0.000 | 0.006 | |
| ProMISe | 0.015 | 0.001 | 0.015 | |
| RDC | 0.102 | 0.003 | 0.106 | |
| Read | 0.004 | 0.001 | 0.004 | |
| ReadExtResult | 0.001 | 0.000 | 0.001 | |
| Spearman | 0.007 | 0.001 | 0.007 | |
| Standardise | 0.000 | 0.000 | 0.001 | |
| ValidateAll | 0.001 | 0.000 | 0.001 | |
| Validation | 0.018 | 0.001 | 0.019 | |
| ValidationT | 0.001 | 0.000 | 0.000 | |
| Zscore | 0.011 | 0.001 | 0.011 | |
| bRank | 0.011 | 0.000 | 0.012 | |
| convert | 0.017 | 0.001 | 0.018 | |
| filterAndCompare | 0 | 0 | 0 | |
| getData | 358.231 | 422.878 | 159.143 | |
| readHeader | 0.019 | 0.029 | 0.006 | |