Mark Pinese
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/messina |
| Branch: RELEASE_3_8 |
| Last Commit: e516792 |
| Last Changed Date: 2018-10-30 11:41:53 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:23:42 -0400 (Sat, 13 Apr 2019).
| Package 913/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| messina 1.18.0 Mark Pinese
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: messina |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/messina_1.18.0.tar.gz && rm -rf messina.buildbin-libdir && mkdir messina.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=messina.buildbin-libdir messina_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL messina_1.18.0.zip && rm messina_1.18.0.tar.gz messina_1.18.0.zip |
| StartedAt: 2019-04-12 18:52:44 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 18:53:39 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 54.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/messina_1.18.0.tar.gz && rm -rf messina.buildbin-libdir && mkdir messina.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=messina.buildbin-libdir messina_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL messina_1.18.0.zip && rm messina_1.18.0.tar.gz messina_1.18.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 63929 100 63929 0 0 1572k 0 --:--:-- --:--:-- --:--:-- 1734k
install for i386
* installing *source* package 'messina' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Classifier.cpp -o Classifier.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Data.cpp -o Data.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c crossval.cpp -o crossval.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c errors.cpp -o errors.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c messinaExtern.cpp -o messinaExtern.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o messina.dll tmp.def Classifier.o Data.o RcppExports.o crossval.o errors.o init.o messinaExtern.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/messina.buildbin-libdir/messina/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'messina'
finding HTML links ... done
MessinaFits-class html
MessinaParameters-class html
MessinaResult-class html
messina-package html
messina html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp2XZTD3/R.INSTALLde868f754d/messina/man/messina.Rd:125: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
messinaDE html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp2XZTD3/R.INSTALLde868f754d/messina/man/messinaDE.Rd:130: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
messinaSurv html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp2XZTD3/R.INSTALLde868f754d/messina/man/messinaSurv.Rd:166: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
messinaTopResults html
plot-MessinaClassResult-missing-method
html
plot-MessinaSurvResult-missing-method html
show-methods html
tcga_kirc_example html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'messina' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Classifier.cpp -o Classifier.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Data.cpp -o Data.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c crossval.cpp -o crossval.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c errors.cpp -o errors.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c messinaExtern.cpp -o messinaExtern.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o messina.dll tmp.def Classifier.o Data.o RcppExports.o crossval.o errors.o init.o messinaExtern.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/messina.buildbin-libdir/messina/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'messina' as messina_1.18.0.zip
* DONE (messina)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'messina' successfully unpacked and MD5 sums checked
In R CMD INSTALL