Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2018-04-28 09:42:57 -0400 (Sat, 28 Apr 2018).
Package 706/1559 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
iBMQ 1.19.0 Greg Imholte
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | [ ERROR ] | ERROR | skipped | skipped |
Package: iBMQ |
Version: 1.19.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL iBMQ |
StartedAt: 2018-04-27 18:03:44 -0400 (Fri, 27 Apr 2018) |
EndedAt: 2018-04-27 18:04:08 -0400 (Fri, 27 Apr 2018) |
EllapsedTime: 23.9 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL iBMQ ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘iBMQ’ ... checking for gcc... clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking how to run the C preprocessor... clang -E checking for pkg-config... /usr/local/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GSL... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking omp.h usability... yes checking omp.h presence... yes checking for omp.h... yes configure: creating ./config.status config.status: creating src/Makevars ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ARS.c -o ARS.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RngStream.c -o RngStream.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c iBMQ_common.c -o iBMQ_common.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c main_parallel_sparse.c -o main_parallel_sparse.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c norm_gamma_generation.c -o norm_gamma_generation.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c sparse.c -o sparse.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iBMQ.so ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/usr/local/lib -lgsl -lgslcblas -lm -lgomp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: library not found for -lgomp clang-4.0: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [iBMQ.so] Error 1 ERROR: compilation failed for package ‘iBMQ’ * removing ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library/iBMQ’