Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 11:49:43 -0400 (Tue, 16 Apr 2019).
Package 555/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
fmcsR 1.24.0 Thomas Girke
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | [ OK ] | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: fmcsR |
Version: 1.24.0 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL fmcsR |
StartedAt: 2019-04-15 18:02:45 -0400 (Mon, 15 Apr 2019) |
EndedAt: 2019-04-15 18:03:01 -0400 (Mon, 15 Apr 2019) |
EllapsedTime: 15.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL fmcsR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘fmcsR’ ... checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for size_t... yes checking for alarm... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating config.h config.status: config.h is unchanged ** libs g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c MCS.cpp -o MCS.o MCS.cpp: In member function ‘void FMCS::MCS::calculate()’: MCS.cpp:108:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < atomCountOne; ++i) { ^ MCS.cpp:116:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < atomCountTwo; ++i) { ^ In file included from MCSCompound.h:15:0, from MCS.h:12, from MCS.cpp:3: MCSList.h: In instantiation of ‘bool FMCS::MCSList<T>::contains(const T&) const [with T = long unsigned int]’: MCS.cpp:381:69: required from here MCSList.h:143:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < length; ++i) { ^ g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c MCSCompound.cpp -o MCSCompound.o In file included from MCSCompound.cpp:5:0: MCSRingDetector.h: In constructor ‘FMCS::MCSRingDetector::Ring::Ring(const FMCS::MCSRingDetector::Edge&, const FMCS::MCSCompound*)’: MCSRingDetector.h:86:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < this->vertexPath.size(); ++i) { ^ MCSRingDetector.h: In member function ‘int FMCS::MCSRingDetector::Ring::rightVertex(size_t) const’: MCSRingDetector.h:142:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (vertexIndex < vertexPath.size()-1) { ^ MCSCompound.cpp: In member function ‘void FMCS::MCSCompound::read(const string&)’: MCSCompound.cpp:157:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < bondCount; ++i) { ^ MCSCompound.cpp: In member function ‘std::__cxx11::string FMCS::MCSCompound::subgraph(const size_t*, size_t, const string&) const’: MCSCompound.cpp:194:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < indexLength; ++i) { ^ MCSCompound.cpp: In member function ‘const FMCS::MCSCompound::Bond* FMCS::MCSCompound::getBond(size_t, size_t) const’: MCSCompound.cpp:467:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < bondCount; ++i) { ^ g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c MCSMap.cpp -o MCSMap.o In file included from MCSMap.h:8:0, from MCSMap.cpp:3: MCSList.h: In instantiation of ‘bool FMCS::MCSList<T>::contains(const T&) const [with T = long unsigned int]’: MCSMap.cpp:28:36: required from here MCSList.h:143:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < length; ++i) { ^ g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c MCSRingDetector.cpp -o MCSRingDetector.o In file included from MCSRingDetector.cpp:13:0: MCSRingDetector.h: In constructor ‘FMCS::MCSRingDetector::Ring::Ring(const FMCS::MCSRingDetector::Edge&, const FMCS::MCSCompound*)’: MCSRingDetector.h:86:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < this->vertexPath.size(); ++i) { ^ MCSRingDetector.h: In member function ‘int FMCS::MCSRingDetector::Ring::rightVertex(size_t) const’: MCSRingDetector.h:142:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (vertexIndex < vertexPath.size()-1) { ^ MCSRingDetector.cpp: In member function ‘void FMCS::MCSRingDetector::sortVertexQueue()’: MCSRingDetector.cpp:93:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < vertexQueue.size(); ++i) { ^ MCSRingDetector.cpp:94:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j = 0; j < queueSize-1-i; ++j ) { ^ MCSRingDetector.cpp: In member function ‘void FMCS::MCSRingDetector::convert()’: MCSRingDetector.cpp:149:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j = 0; j < degree; ++j) { ^ MCSRingDetector.cpp: In member function ‘void FMCS::MCSRingDetector::detect()’: MCSRingDetector.cpp:175:13: warning: unused variable ‘aromaticCount’ [-Wunused-variable] int aromaticCount = 0; ^ MCSRingDetector.cpp: In member function ‘bool FMCS::MCSRingDetector::Ring::isSp2Hybridized(size_t, int, bool&) const’: MCSRingDetector.cpp:194:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (level > vertexPath.size()) { ^ g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fmcs_R_wrap.cpp -o fmcs_R_wrap.o fmcs_R_wrap.cpp: In function ‘void fmcs_R_wrap(const char**, const char**, int*, int*, int*, int*, int*, int*, int*, const char**, const char**, const char**, const char**, const char**)’: fmcs_R_wrap.cpp:74:45: warning: ‘runningMode’ may be used uninitialized in this function [-Wmaybe-uninitialized] matchType, runningMode, *timeout); ^ fmcs_R_wrap.cpp:74:45: warning: ‘matchType’ may be used uninitialized in this function [-Wmaybe-uninitialized] g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c util.cpp -o util.o util.cpp: In function ‘std::__cxx11::string getUpper(const string&)’: util.cpp:11:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < upper.length(); ++i) { ^ g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o fmcsR.so MCS.o MCSCompound.o MCSMap.o MCSRingDetector.o fmcs_R_wrap.o util.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.8-bioc/R/library/fmcsR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (fmcsR)