Davide Rambaldi
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/flowFit |
| Branch: RELEASE_3_8 |
| Last Commit: dfa5ee7 |
| Last Changed Date: 2019-01-04 13:14:36 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:22:53 -0400 (Sat, 13 Apr 2019).
| Package 534/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowFit 1.20.1 Davide Rambaldi
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: flowFit |
| Version: 1.20.1 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowFit.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings flowFit_1.20.1.tar.gz |
| StartedAt: 2019-04-13 02:16:57 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 02:19:37 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 160.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowFit.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowFit.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings flowFit_1.20.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/flowFit.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowFit/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowFit' version '1.20.1'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowFit' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
BugReports field is not a suitable URL but contains an email address
which will be used as from R 3.4.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.generationsPercent: no visible global function definition for
'integrate'
parentFitting: no visible global function definition for 'sd'
parentFitting: no visible global function definition for 'hist'
proliferationFitting: no visible global function definition for 'hist'
proliferationGrid: no visible global function definition for 'rgb'
proliferationGrid: no visible global function definition for 'dev.cur'
proliferationGrid: no visible global function definition for 'abline'
plot,parentFittingData-ANY: no visible global function definition for
'par'
plot,parentFittingData-ANY: no visible global function definition for
'layout'
plot,parentFittingData-ANY: no visible global function definition for
'lines'
plot,parentFittingData-ANY: no visible global function definition for
'axis'
plot,parentFittingData-ANY: no visible global function definition for
'plot.new'
plot,parentFittingData-ANY: no visible binding for global variable
'black'
plot,proliferationFittingData-ANY: no visible global function
definition for 'dev.interactive'
plot,proliferationFittingData-ANY: no visible global function
definition for 'par'
plot,proliferationFittingData-ANY: no visible global function
definition for 'rainbow'
plot,proliferationFittingData-ANY: no visible global function
definition for 'layout'
plot,proliferationFittingData-ANY: no visible global function
definition for 'lines'
plot,proliferationFittingData-ANY: no visible global function
definition for 'axis'
plot,proliferationFittingData-ANY: no visible global function
definition for 'plot.new'
plot,proliferationFittingData-ANY: no visible global function
definition for 'polygon'
plot,proliferationFittingData-ANY: no visible global function
definition for 'text'
plot,proliferationFittingData-ANY: no visible binding for global
variable 'black'
summary,parentFittingData: no visible global function definition for
'df.residual'
summary,proliferationFittingData: no visible global function definition
for 'df.residual'
Undefined global functions or variables:
abline axis black dev.cur dev.interactive df.residual hist integrate
layout lines par plot.new polygon rainbow rgb sd text
Consider adding
importFrom("grDevices", "dev.cur", "dev.interactive", "rainbow", "rgb")
importFrom("graphics", "abline", "axis", "hist", "layout", "lines",
"par", "plot.new", "polygon", "text")
importFrom("stats", "df.residual", "integrate", "sd")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
flowFit-package 10.22 0.05 10.28
proliferationFitting 9.18 0.02 9.22
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
flowFit-package 9.00 0.01 9.02
proliferationFitting 7.91 0.05 7.95
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/flowFit.Rcheck/00check.log'
for details.
flowFit.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/flowFit_1.20.1.tar.gz && rm -rf flowFit.buildbin-libdir && mkdir flowFit.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowFit.buildbin-libdir flowFit_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL flowFit_1.20.1.zip && rm flowFit_1.20.1.tar.gz flowFit_1.20.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 46926 100 46926 0 0 1039k 0 --:--:-- --:--:-- --:--:-- 1145k
install for i386
* installing *source* package 'flowFit' ...
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowFit'
finding HTML links ... done
flowFit-package html
finding level-2 HTML links ... done
generationsDistance html
getGenerations html
logTicks html
parentFitting html
parentFittingData-class html
plot-methods html
proliferationFitting html
proliferationFittingData-class html
proliferationGrid html
proliferationIndex html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'flowFit' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowFit' as flowFit_1.20.1.zip
* DONE (flowFit)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'flowFit' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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flowFit.Rcheck/examples_i386/flowFit-Ex.timings
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flowFit.Rcheck/examples_x64/flowFit-Ex.timings
|